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    Zcchc2 zinc finger, CCHC domain containing 2 [ Mus musculus (house mouse) ]

    Gene ID: 227449, updated on 23-Jun-2021

    Summary

    Official Symbol
    Zcchc2provided by MGI
    Official Full Name
    zinc finger, CCHC domain containing 2provided by MGI
    Primary source
    MGI:MGI:2444114
    See related
    Ensembl:ENSMUSG00000038866
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AW212015; 9930114B20Rik
    Expression
    Ubiquitous expression in testis adult (RPKM 19.4), thymus adult (RPKM 8.8) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Zcchc2 in Genome Data Viewer
    Location:
    1; 1 E2.1
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (105916929..105961807)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (105990390..106034077)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (107886983..107930654)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 26214 Neighboring gene zinc finger protein of the cerebellum 5 pseudogene Neighboring gene predicted gene 7160 Neighboring gene predicted gene, 26509 Neighboring gene predicted gene, 20753

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables molecular_function ND
    No biological Data available
    more info
     
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    zinc finger CCHC domain-containing protein 2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001122675.1NP_001116147.1  zinc finger CCHC domain-containing protein 2 isoform B

      Status: VALIDATED

      Source sequence(s)
      AK046562, AK173248, BP762779
      Consensus CDS
      CCDS48336.1
      UniProtKB/Swiss-Prot
      Q69ZB8
      Related
      ENSMUSP00000113128.2, ENSMUST00000119166.8
      Conserved Domains (2) summary
      pfam00098
      Location:11211136
      zf-CCHC; Zinc knuckle
      cl02563
      Location:341433
      PX_domain; The Phox Homology domain, a phosphoinositide binding module
    2. NM_001122676.1NP_001116148.1  zinc finger CCHC domain-containing protein 2 isoform A

      See identical proteins and their annotated locations for NP_001116148.1

      Status: VALIDATED

      Source sequence(s)
      AK046562, AK173248, BC055760, BP762779
      Consensus CDS
      CCDS48335.1
      UniProtKB/Swiss-Prot
      Q69ZB8
      Related
      ENSMUSP00000113974.2, ENSMUST00000118196.8
      Conserved Domains (2) summary
      pfam00098
      Location:11211136
      zf-CCHC; Zinc knuckle
      cl02563
      Location:341433
      PX_domain; The Phox Homology domain, a phosphoinositide binding module

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      105916929..105961807
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006529512.5XP_006529575.1  zinc finger CCHC domain-containing protein 2 isoform X1

      Conserved Domains (4) summary
      PHA03247
      Location:813960
      PHA03247; large tegument protein UL36; Provisional
      pfam00098
      Location:11261141
      zf-CCHC; Zinc knuckle
      pfam17823
      Location:657944
      DUF5585; Family of unknown function (DUF5585)
      cl02563
      Location:341433
      PX_domain; The Phox Homology domain, a phosphoinositide binding module
    2. XM_006529516.5XP_006529579.1  zinc finger CCHC domain-containing protein 2 isoform X6

      Conserved Domains (4) summary
      PHA03379
      Location:7391066
      PHA03379; EBNA-3A; Provisional
      pfam00098
      Location:10781093
      zf-CCHC; Zinc knuckle
      pfam17823
      Location:587896
      DUF5585; Family of unknown function (DUF5585)
      cl02563
      Location:341433
      PX_domain; The Phox Homology domain, a phosphoinositide binding module
    3. XM_006529514.5XP_006529577.1  zinc finger CCHC domain-containing protein 2 isoform X3

      Conserved Domains (4) summary
      PHA03247
      Location:785932
      PHA03247; large tegument protein UL36; Provisional
      pfam00098
      Location:10981113
      zf-CCHC; Zinc knuckle
      pfam17823
      Location:629916
      DUF5585; Family of unknown function (DUF5585)
      cl02563
      Location:341433
      PX_domain; The Phox Homology domain, a phosphoinositide binding module
    4. XM_006529515.5XP_006529578.1  zinc finger CCHC domain-containing protein 2 isoform X5

      Conserved Domains (4) summary
      PHA03247
      Location:780927
      PHA03247; large tegument protein UL36; Provisional
      pfam00098
      Location:10931108
      zf-CCHC; Zinc knuckle
      pfam17823
      Location:624911
      DUF5585; Family of unknown function (DUF5585)
      cl02563
      Location:341433
      PX_domain; The Phox Homology domain, a phosphoinositide binding module
    5. XM_030253840.2XP_030109700.1  zinc finger CCHC domain-containing protein 2 isoform X9

      Conserved Domains (4) summary
      PHA03379
      Location:7111038
      PHA03379; EBNA-3A; Provisional
      pfam00098
      Location:10501065
      zf-CCHC; Zinc knuckle
      pfam17823
      Location:559868
      DUF5585; Family of unknown function (DUF5585)
      cl02563
      Location:341433
      PX_domain; The Phox Homology domain, a phosphoinositide binding module
    6. XM_006529513.5XP_006529576.1  zinc finger CCHC domain-containing protein 2 isoform X2

      Conserved Domains (3) summary
      PHA03247
      Location:789936
      PHA03247; large tegument protein UL36; Provisional
      pfam00098
      Location:11021117
      zf-CCHC; Zinc knuckle
      pfam17823
      Location:633920
      DUF5585; Family of unknown function (DUF5585)
    7. XM_030253835.2XP_030109695.1  zinc finger CCHC domain-containing protein 2 isoform X4

      Conserved Domains (3) summary
      PHA03247
      Location:784931
      PHA03247; large tegument protein UL36; Provisional
      pfam00098
      Location:10971112
      zf-CCHC; Zinc knuckle
      pfam17823
      Location:628915
      DUF5585; Family of unknown function (DUF5585)
    8. XM_006529517.5XP_006529580.1  zinc finger CCHC domain-containing protein 2 isoform X7

      Conserved Domains (3) summary
      PHA03247
      Location:761908
      PHA03247; large tegument protein UL36; Provisional
      pfam00098
      Location:10741089
      zf-CCHC; Zinc knuckle
      pfam17823
      Location:605892
      DUF5585; Family of unknown function (DUF5585)
    9. XM_006529518.5XP_006529581.1  zinc finger CCHC domain-containing protein 2 isoform X8

      Conserved Domains (3) summary
      PHA03247
      Location:756903
      PHA03247; large tegument protein UL36; Provisional
      pfam00098
      Location:10691084
      zf-CCHC; Zinc knuckle
      pfam17823
      Location:600887
      DUF5585; Family of unknown function (DUF5585)
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