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    Ahctf1 AT hook containing transcription factor 1 [ Mus musculus (house mouse) ]

    Gene ID: 226747, updated on 23-Jun-2021

    Summary

    Official Symbol
    Ahctf1provided by MGI
    Official Full Name
    AT hook containing transcription factor 1provided by MGI
    Primary source
    MGI:MGI:1915033
    See related
    Ensembl:ENSMUSG00000026491
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    El; Elys; AV011447; 6230412P20Rik
    Expression
    Ubiquitous expression in testis adult (RPKM 11.3), placenta adult (RPKM 10.3) and 25 other tissues See more
    Orthologs
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    Genomic context

    See Ahctf1 in Genome Data Viewer
    Location:
    1 H4; 1 83.62 cM
    Exon count:
    36
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (179572469..179631580, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (179744904..179804015, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (181675035..181734146, complement)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene consortin, connexin sorting protein Neighboring gene saccharopine dehydrogenase (putative) Neighboring gene kinesin family member 28 Neighboring gene predicted gene, 31668 Neighboring gene CDC42 binding protein kinase alpha Neighboring gene predicted gene, 50608

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1)  1 citation
    • Endonuclease-mediated (1) 

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell cycle IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within cell division IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in hemopoiesis TAS
    Traceable Author Statement
    more info
    PubMed 
    acts_upstream_of_or_within mRNA transport IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in nuclear pore complex assembly ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in regulation of cytokinesis ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    colocalizes_with chromatin ISO
    Inferred from Sequence Orthology
    more info
     
    located_in chromosome IEA
    Inferred from Electronic Annotation
    more info
     
    located_in chromosome, centromeric region IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    colocalizes_with kinetochore ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nuclear matrix IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nuclear membrane ISO
    Inferred from Sequence Orthology
    more info
     
    part_of nuclear pore ISO
    Inferred from Sequence Orthology
    more info
     
    part_of nuclear pore outer ring ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    protein ELYS
    Names
    embryonic large molecule derived from yolk sac
    putative AT-hook-containing transcription factor 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026375.2NP_080651.2  protein ELYS

      See identical proteins and their annotated locations for NP_080651.2

      Status: VALIDATED

      Source sequence(s)
      AC113977, AC122411
      Consensus CDS
      CCDS15564.1
      UniProtKB/Swiss-Prot
      Q8CJF7
      Related
      ENSMUSP00000027768.8, ENSMUST00000027768.14
      Conserved Domains (2) summary
      pfam13934
      Location:722947
      ELYS; Nuclear pore complex assembly
      pfam16687
      Location:2489
      ELYS-bb; beta-propeller of ELYS nucleoporin

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      179572469..179631580 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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