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    Ahctf1 AT hook containing transcription factor 1 [ Mus musculus (house mouse) ]

    Gene ID: 226747, updated on 31-Jan-2019

    Summary

    Official Symbol
    Ahctf1provided by MGI
    Official Full Name
    AT hook containing transcription factor 1provided by MGI
    Primary source
    MGI:MGI:1915033
    See related
    Ensembl:ENSMUSG00000026491
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Elys; AV011447; 6230412P20Rik
    Expression
    Ubiquitous expression in testis adult (RPKM 11.3), placenta adult (RPKM 10.3) and 25 other tissues See more
    Orthologs

    Genomic context

    See Ahctf1 in Genome Data Viewer
    Location:
    1 H4; 1 83.62 cM
    Exon count:
    38
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 1 NC_000067.6 (179744894..179804015, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (181675035..181734146, complement)

    Chromosome 1 - NC_000067.6Genomic Context describing neighboring genes Neighboring gene consortin, connexin sorting protein Neighboring gene saccharopine dehydrogenase (putative) Neighboring gene kinesin family member 28 Neighboring gene predicted gene, 31668 Neighboring gene CDC42 binding protein kinase alpha Neighboring gene uncharacterized LOC108167749

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    DNA-binding transcription factor activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Process Evidence Code Pubs
    cell cycle IEA
    Inferred from Electronic Annotation
    more info
     
    cell division IEA
    Inferred from Electronic Annotation
    more info
     
    hemopoiesis TAS
    Traceable Author Statement
    more info
    PubMed 
    mRNA transport IEA
    Inferred from Electronic Annotation
    more info
     
    multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
     
    nuclear pore complex assembly ISO
    Inferred from Sequence Orthology
    more info
     
    protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of cytokinesis ISO
    Inferred from Sequence Orthology
    more info
     
    regulation of transcription, DNA-templated IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    colocalizes_with chromatin ISO
    Inferred from Sequence Orthology
    more info
     
    chromosome IEA
    Inferred from Electronic Annotation
    more info
     
    chromosome, centromeric region IEA
    Inferred from Electronic Annotation
    more info
     
    colocalizes_with condensed chromosome kinetochore ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    kinetochore IEA
    Inferred from Electronic Annotation
    more info
     
    nuclear matrix IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nuclear membrane ISO
    Inferred from Sequence Orthology
    more info
     
    colocalizes_with nuclear pore ISO
    Inferred from Sequence Orthology
    more info
     
    colocalizes_with nuclear pore outer ring ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    protein ELYS
    Names
    embryonic large molecule derived from yolk sac
    putative AT-hook-containing transcription factor 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026375.2NP_080651.2  protein ELYS

      See identical proteins and their annotated locations for NP_080651.2

      Status: VALIDATED

      Source sequence(s)
      AC113977, AC122411
      Consensus CDS
      CCDS15564.1
      UniProtKB/Swiss-Prot
      Q8CJF7
      Related
      ENSMUSP00000027768.7, ENSMUST00000027768.13
      Conserved Domains (2) summary
      pfam13934
      Location:722947
      ELYS; Nuclear pore complex assembly
      pfam16687
      Location:2489
      ELYS-bb; beta-propeller of ELYS nucleoporin

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000067.6 Reference GRCm38.p4 C57BL/6J

      Range
      179744894..179804015 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006496800.3XP_006496863.1  protein ELYS isoform X1

      Conserved Domains (2) summary
      pfam13934
      Location:7941019
      ELYS; Nuclear pore complex assembly
      pfam16687
      Location:74561
      ELYS-bb; beta-propeller of ELYS nucleoporin

    RNA

    1. XR_001784117.1 RNA Sequence

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