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    Prrc2c proline-rich coiled-coil 2C [ Mus musculus (house mouse) ]

    Gene ID: 226562, updated on 16-Jul-2021

    Summary

    Official Symbol
    Prrc2cprovided by MGI
    Official Full Name
    proline-rich coiled-coil 2Cprovided by MGI
    Primary source
    MGI:MGI:1913754
    See related
    Ensembl:ENSMUSG00000040225
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Bat2; Bat2d; Prrc3; Bat2d1; Bat2l2; mKIAA1096; A630006J20; 1810043M20Rik; 9630039I18Rik; E130112L15Rik
    Expression
    Ubiquitous expression in thymus adult (RPKM 26.1), limb E14.5 (RPKM 16.9) and 28 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Prrc2c in Genome Data Viewer
    Location:
    1 H2.1; 1
    Exon count:
    36
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (162499354..162568125, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (162671785..162740560, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (164601916..164670687, complement)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 4E family member 1B pseudogene Neighboring gene myocilin Neighboring gene myocilin opposite strand Neighboring gene flavin containing monooxygenase 4 Neighboring gene VISTA enhancer mm713 Neighboring gene flavin containing monooxygenase 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein C-terminus binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in cell differentiation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in hematopoietic progenitor cell differentiation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    acts_upstream_of_or_within hematopoietic progenitor cell differentiation IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    involved_in stress granule assembly ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    protein PRRC2C
    Names
    BAT2 domain containing 1
    BAT2 domain-containing protein 1
    HLA-B-associated transcript 2-like 2
    proline-rich and coiled-coil-containing protein 2C
    protein BAT2-like 2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081290.1NP_001074759.1  protein PRRC2C

      See identical proteins and their annotated locations for NP_001074759.1

      Status: PROVISIONAL

      Source sequence(s)
      AC118643, AC132867
      Consensus CDS
      CCDS35749.1
      UniProtKB/Swiss-Prot
      Q3TLH4
      Related
      ENSMUSP00000138433.2, ENSMUST00000182660.8
      Conserved Domains (2) summary
      pfam03153
      Location:23312534
      TFIIA; Transcription factor IIA, alpha/beta subunit
      pfam07001
      Location:1162
      BAT2_N; BAT2 N-terminus

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      162499354..162568125 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017320026.3XP_017175515.1  protein PRRC2C isoform X7

      Conserved Domains (2) summary
      PHA03247
      Location:17071979
      PHA03247; large tegument protein UL36; Provisional
      pfam07001
      Location:1162
      BAT2_N; BAT2 N-terminus
    2. XM_006496771.5XP_006496834.1  protein PRRC2C isoform X8

      Conserved Domains (2) summary
      PHA03247
      Location:17071979
      PHA03247; large tegument protein UL36; Provisional
      pfam07001
      Location:1162
      BAT2_N; BAT2 N-terminus
    3. XM_006496772.5XP_006496835.1  protein PRRC2C isoform X11

      Conserved Domains (2) summary
      PHA03247
      Location:17071979
      PHA03247; large tegument protein UL36; Provisional
      pfam07001
      Location:1162
      BAT2_N; BAT2 N-terminus
    4. XM_006496766.5XP_006496829.1  protein PRRC2C isoform X1

      Conserved Domains (2) summary
      PHA03247
      Location:17071979
      PHA03247; large tegument protein UL36; Provisional
      pfam07001
      Location:1162
      BAT2_N; BAT2 N-terminus
    5. XM_006496770.5XP_006496833.1  protein PRRC2C isoform X6

      Conserved Domains (2) summary
      PHA03247
      Location:17071979
      PHA03247; large tegument protein UL36; Provisional
      pfam07001
      Location:1162
      BAT2_N; BAT2 N-terminus
    6. XM_011238785.4XP_011237087.1  protein PRRC2C isoform X12

      UniProtKB/TrEMBL
      S4R294
      Related
      ENSMUSP00000138548.2, ENSMUST00000182149.8
      Conserved Domains (2) summary
      PHA03247
      Location:17071979
      PHA03247; large tegument protein UL36; Provisional
      pfam07001
      Location:1162
      BAT2_N; BAT2 N-terminus
    7. XM_011238784.4XP_011237086.1  protein PRRC2C isoform X9

      See identical proteins and their annotated locations for XP_011237086.1

      UniProtKB/Swiss-Prot
      Q3TLH4
      Conserved Domains (2) summary
      PHA03247
      Location:17071979
      PHA03247; large tegument protein UL36; Provisional
      pfam07001
      Location:1162
      BAT2_N; BAT2 N-terminus
    8. XM_006496769.5XP_006496832.1  protein PRRC2C isoform X5

      Conserved Domains (2) summary
      PHA03247
      Location:17001972
      PHA03247; large tegument protein UL36; Provisional
      pfam07001
      Location:1155
      BAT2_N; BAT2 N-terminus
    9. XM_006496767.5XP_006496830.1  protein PRRC2C isoform X2

      Conserved Domains (2) summary
      PHA03247
      Location:17051977
      PHA03247; large tegument protein UL36; Provisional
      pfam07001
      Location:1160
      BAT2_N; BAT2 N-terminus
    10. XM_011238788.4XP_011237090.1  protein PRRC2C isoform X10

      UniProtKB/TrEMBL
      S4R2J9
      Related
      ENSMUSP00000138674.2, ENSMUST00000182593.8
      Conserved Domains (2) summary
      PHA03247
      Location:17051977
      PHA03247; large tegument protein UL36; Provisional
      pfam07001
      Location:1160
      BAT2_N; BAT2 N-terminus
    11. XM_011238787.4XP_011237089.1  protein PRRC2C isoform X4

      UniProtKB/TrEMBL
      A0A0A0MQ79
      Related
      ENSMUSP00000028016.10, ENSMUST00000028016.16
      Conserved Domains (2) summary
      PHA03247
      Location:17051977
      PHA03247; large tegument protein UL36; Provisional
      pfam07001
      Location:1160
      BAT2_N; BAT2 N-terminus
    12. XM_006496768.5XP_006496831.1  protein PRRC2C isoform X3

      Conserved Domains (2) summary
      PHA03247
      Location:17021974
      PHA03247; large tegument protein UL36; Provisional
      pfam07001
      Location:1157
      BAT2_N; BAT2 N-terminus
    13. XM_011238786.4XP_011237088.1  protein PRRC2C isoform X13

      Conserved Domains (2) summary
      PHA03247
      Location:371443
      PHA03247; large tegument protein UL36; Provisional
      pfam07001
      Location:1162
      BAT2_N; BAT2 N-terminus

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_025603.1: Suppressed sequence

      Description
      NM_025603.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
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