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    Suco SUN domain containing ossification factor [ Mus musculus (house mouse) ]

    Gene ID: 226551, updated on 31-Jan-2019

    Summary

    Official Symbol
    Sucoprovided by MGI
    Official Full Name
    SUN domain containing ossification factorprovided by MGI
    Primary source
    MGI:MGI:2138346
    See related
    Ensembl:ENSMUSG00000040297
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Opt; AI848100; AU016931; 4732491B11
    Expression
    Ubiquitous expression in testis adult (RPKM 8.6), bladder adult (RPKM 7.4) and 25 other tissues See more
    Orthologs

    Genomic context

    See Suco in Genome Data Viewer
    Location:
    1; 1 H2.1
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 1 NC_000067.6 (161816112..161877090, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (163746243..163806792, complement)

    Chromosome 1 - NC_000067.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 31869 Neighboring gene Fas ligand (TNF superfamily, member 6) Neighboring gene cyclin-dependent kinase 7 pseudogene Neighboring gene predicted gene, 31925 Neighboring gene RIKEN cDNA 4930558K02 gene Neighboring gene phosphatidylinositol glycan anchor biosynthesis, class C

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 

    General gene information

    Markers

    Homology

    Clone Names

    • MGC170004

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
     
    ossification IEA
    Inferred from Electronic Annotation
    more info
     
    positive regulation of collagen biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    positive regulation of osteoblast differentiation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    protein folding in endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    regulation of bone remodeling IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    regulation of bone remodeling IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    rough endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    SUN domain-containing ossification factor
    Names
    SUN-like protein 1
    membrane protein CH1
    osteopotentia
    protein C1orf9 homolog
    protein osteopotentia

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001357401.1NP_001344330.1  SUN domain-containing ossification factor isoform 2 precursor

      Status: VALIDATED

      Source sequence(s)
      AC164414
      Conserved Domains (2) summary
      pfam03938
      Location:9361010
      OmpH; Outer membrane protein (OmpH-like)
      pfam07738
      Location:326455
      Sad1_UNC; Sad1 / UNC-like C-terminal
    2. NM_001357402.1NP_001344331.1  SUN domain-containing ossification factor isoform 3 precursor

      Status: VALIDATED

      Source sequence(s)
      AC164414
      Conserved Domains (2) summary
      pfam03938
      Location:9321006
      OmpH; Outer membrane protein (OmpH-like)
      pfam07738
      Location:322451
      Sad1_UNC; Sad1 / UNC-like C-terminal
    3. NM_172645.3NP_766233.2  SUN domain-containing ossification factor isoform 1 precursor

      See identical proteins and their annotated locations for NP_766233.2

      Status: VALIDATED

      Source sequence(s)
      AC164414
      Consensus CDS
      CCDS48415.1
      UniProtKB/TrEMBL
      B2RRF3
      Related
      ENSMUSP00000044815.5, ENSMUST00000048377.10
      Conserved Domains (2) summary
      pfam04899
      Location:9361005
      MbeD_MobD; MbeD/MobD like
      pfam07738
      Location:326455
      Sad1_UNC; Sad1 / UNC-like C-terminal

    RNA

    1. NR_151683.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC164414
    2. NR_151684.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC164414

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000067.6 Reference GRCm38.p4 C57BL/6J

      Range
      161816112..161877090 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006496761.2XP_006496824.1  SUN domain-containing ossification factor isoform X3

      Conserved Domains (2) summary
      pfam04899
      Location:9321001
      MbeD_MobD; MbeD/MobD like
      pfam07738
      Location:322451
      Sad1_UNC; Sad1 / UNC-like C-terminal
    2. XM_006496759.2XP_006496822.1  SUN domain-containing ossification factor isoform X1

      Conserved Domains (2) summary
      pfam03938
      Location:9361010
      OmpH; Outer membrane protein (OmpH-like)
      pfam07738
      Location:326455
      Sad1_UNC; Sad1 / UNC-like C-terminal
    3. XM_017320016.1XP_017175505.1  SUN domain-containing ossification factor isoform X6

      Conserved Domains (2) summary
      pfam04899
      Location:9361005
      MbeD_MobD; MbeD/MobD like
      pfam07738
      Location:326455
      Sad1_UNC; Sad1 / UNC-like C-terminal
    4. XM_006496763.2XP_006496826.1  SUN domain-containing ossification factor isoform X5

      Conserved Domains (2) summary
      pfam04899
      Location:925994
      MbeD_MobD; MbeD/MobD like
      pfam07738
      Location:322444
      Sad1_UNC; Sad1 / UNC-like C-terminal
    5. XM_006496762.2XP_006496825.1  SUN domain-containing ossification factor isoform X4

      Conserved Domains (2) summary
      pfam04899
      Location:929998
      MbeD_MobD; MbeD/MobD like
      pfam07738
      Location:326448
      Sad1_UNC; Sad1 / UNC-like C-terminal
    6. XM_006496760.2XP_006496823.1  SUN domain-containing ossification factor isoform X2

      UniProtKB/Swiss-Prot
      Q8C341
      Conserved Domains (2) summary
      pfam03938
      Location:9321006
      OmpH; Outer membrane protein (OmpH-like)
      pfam07738
      Location:322451
      Sad1_UNC; Sad1 / UNC-like C-terminal
    7. XM_006496765.2XP_006496828.1  SUN domain-containing ossification factor isoform X7

      Conserved Domains (2) summary
      pfam04899
      Location:9361005
      MbeD_MobD; MbeD/MobD like
      pfam07738
      Location:326455
      Sad1_UNC; Sad1 / UNC-like C-terminal

    RNA

    1. XR_001784105.1 RNA Sequence

    2. XR_001784104.1 RNA Sequence

    3. XR_373602.2 RNA Sequence

    4. XR_373603.3 RNA Sequence

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