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    R3hdm1 R3H domain containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 226412, updated on 23-Jun-2021

    Summary

    Official Symbol
    R3hdm1provided by MGI
    Official Full Name
    R3H domain containing 1provided by MGI
    Primary source
    MGI:MGI:2448514
    See related
    Ensembl:ENSMUSG00000056211
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    R3hdm
    Expression
    Broad expression in cortex adult (RPKM 66.1), frontal lobe adult (RPKM 51.5) and 27 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See R3hdm1 in Genome Data Viewer
    Location:
    1; 1 E3
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (128031016..128165475)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (128103282..128237738)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (129999883..130134312)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene zinc finger, RAN-binding domain containing 3 Neighboring gene My020 protein Neighboring gene ribosomal protein L28, pseudogene 1 Neighboring gene male-enhanced antigen 1 pseudogene Neighboring gene microRNA 128-1 Neighboring gene predicted gene, 41949 Neighboring gene UBX domain protein 4 Neighboring gene lactase

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    R3H domain-containing protein 1
    Names
    R3H domain (binds single-stranded nucleic acids)
    R3H domain 1 (binds single-stranded nucleic acids)

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001357482.1NP_001344411.1  R3H domain-containing protein 1

      Status: VALIDATED

      Source sequence(s)
      AC161809
      Consensus CDS
      CCDS15250.1
      Conserved Domains (3) summary
      cd02642
      Location:167228
      R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
      pfam12752
      Location:251302
      SUZ; SUZ domain
      cl25764
      Location:682917
      PAT1; Topoisomerase II-associated protein PAT1
    2. NM_181750.2NP_861415.2  R3H domain-containing protein 1

      See identical proteins and their annotated locations for NP_861415.2

      Status: VALIDATED

      Source sequence(s)
      BC032160, BC049181, BY017957
      Consensus CDS
      CCDS15250.1
      UniProtKB/TrEMBL
      E9Q9Q2, Q80ZH9
      Related
      ENSMUSP00000043103.5, ENSMUST00000036288.11
      Conserved Domains (3) summary
      cd02642
      Location:167228
      R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
      pfam12752
      Location:251302
      SUZ; SUZ domain
      cl25764
      Location:682917
      PAT1; Topoisomerase II-associated protein PAT1

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      128031016..128165475
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030253185.2XP_030109045.1  R3H domain-containing protein 1 isoform X17

      Conserved Domains (1) summary
      pfam12752
      Location:3889
      SUZ; SUZ domain
    2. XM_036163899.1XP_036019792.1  R3H domain-containing protein 1 isoform X17

      Conserved Domains (1) summary
      pfam12752
      Location:3889
      SUZ; SUZ domain
    3. XM_006529417.4XP_006529480.1  R3H domain-containing protein 1 isoform X1

      Conserved Domains (3) summary
      cd02642
      Location:153214
      R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
      pfam03157
      Location:475885
      Glutenin_hmw; High molecular weight glutenin subunit
      pfam12752
      Location:237288
      SUZ; SUZ domain
    4. XM_030253186.2XP_030109046.1  R3H domain-containing protein 1 isoform X17

      Conserved Domains (1) summary
      pfam12752
      Location:3889
      SUZ; SUZ domain
    5. XM_006529420.4XP_006529483.1  R3H domain-containing protein 1 isoform X4

      Conserved Domains (4) summary
      cd02642
      Location:123184
      R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
      PTZ00440
      Location:8355
      PTZ00440; reticulocyte binding protein 2-like protein; Provisional
      pfam03157
      Location:445855
      Glutenin_hmw; High molecular weight glutenin subunit
      pfam12752
      Location:207258
      SUZ; SUZ domain
    6. XM_030253188.2XP_030109048.1  R3H domain-containing protein 1 isoform X18

      Conserved Domains (2) summary
      pfam09770
      Location:253524
      PAT1; Topoisomerase II-associated protein PAT1
      pfam12752
      Location:3889
      SUZ; SUZ domain
    7. XM_017319914.3XP_017175403.1  R3H domain-containing protein 1 isoform X19

      Conserved Domains (2) summary
      pfam09770
      Location:400654
      PAT1; Topoisomerase II-associated protein PAT1
      pfam12752
      Location:3889
      SUZ; SUZ domain
    8. XM_006529419.4XP_006529482.1  R3H domain-containing protein 1 isoform X3

      See identical proteins and their annotated locations for XP_006529482.1

      UniProtKB/TrEMBL
      B9EHE8
      Conserved Domains (3) summary
      cd02642
      Location:167228
      R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
      pfam09606
      Location:673959
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam12752
      Location:251302
      SUZ; SUZ domain
    9. XM_006529421.4XP_006529484.1  R3H domain-containing protein 1 isoform X8

      Conserved Domains (3) summary
      cd02642
      Location:167228
      R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
      pfam03157
      Location:401814
      Glutenin_hmw; High molecular weight glutenin subunit
      pfam12752
      Location:251302
      SUZ; SUZ domain
    10. XM_006529423.5XP_006529486.1  R3H domain-containing protein 1 isoform X11

      Conserved Domains (3) summary
      cd02642
      Location:167228
      R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
      pfam09606
      Location:588874
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam12752
      Location:251302
      SUZ; SUZ domain
    11. XM_006529418.4XP_006529481.1  R3H domain-containing protein 1 isoform X2

      Conserved Domains (2) summary
      cd02642
      Location:167228
      R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
      pfam12752
      Location:251302
      SUZ; SUZ domain
    12. XM_030253147.2XP_030109007.1  R3H domain-containing protein 1 isoform X5

      Conserved Domains (3) summary
      cd02642
      Location:167228
      R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
      pfam09606
      Location:657943
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam12752
      Location:251302
      SUZ; SUZ domain
    13. XM_006529422.4XP_006529485.1  R3H domain-containing protein 1 isoform X10

      Conserved Domains (3) summary
      cd02642
      Location:167228
      R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
      pfam03157
      Location:388798
      Glutenin_hmw; High molecular weight glutenin subunit
      pfam12752
      Location:251302
      SUZ; SUZ domain
    14. XM_036163855.1XP_036019748.1  R3H domain-containing protein 1 isoform X13

      Conserved Domains (3) summary
      cd02642
      Location:167228
      R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
      pfam09606
      Location:512858
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam12752
      Location:251302
      SUZ; SUZ domain
    15. XM_030253152.2XP_030109012.1  R3H domain-containing protein 1 isoform X7

      Conserved Domains (4) summary
      cd02642
      Location:123184
      R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
      PTZ00440
      Location:8355
      PTZ00440; reticulocyte binding protein 2-like protein; Provisional
      pfam09606
      Location:629915
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam12752
      Location:207258
      SUZ; SUZ domain
    16. XM_006529424.5XP_006529487.1  R3H domain-containing protein 1 isoform X12

      Conserved Domains (4) summary
      cd02642
      Location:123184
      R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
      PTZ00440
      Location:8355
      PTZ00440; reticulocyte binding protein 2-like protein; Provisional
      pfam03157
      Location:357770
      Glutenin_hmw; High molecular weight glutenin subunit
      pfam12752
      Location:207258
      SUZ; SUZ domain
    17. XM_036163872.1XP_036019765.1  R3H domain-containing protein 1 isoform X15

      Conserved Domains (4) summary
      cd02642
      Location:123184
      R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
      PTZ00440
      Location:8355
      PTZ00440; reticulocyte binding protein 2-like protein; Provisional
      pfam09606
      Location:484830
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam12752
      Location:207258
      SUZ; SUZ domain
    18. XM_030253150.2XP_030109010.1  R3H domain-containing protein 1 isoform X6

      Conserved Domains (4) summary
      cd02642
      Location:123184
      R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
      PTZ00440
      Location:8345
      PTZ00440; reticulocyte binding protein 2-like protein; Provisional
      pfam03157
      Location:429839
      Glutenin_hmw; High molecular weight glutenin subunit
      pfam12752
      Location:207258
      SUZ; SUZ domain
    19. XM_030253156.2XP_030109016.1  R3H domain-containing protein 1 isoform X9

      Conserved Domains (4) summary
      cd02642
      Location:123184
      R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
      PTZ00440
      Location:8345
      PTZ00440; reticulocyte binding protein 2-like protein; Provisional
      pfam09606
      Location:613899
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam12752
      Location:207258
      SUZ; SUZ domain
    20. XM_030253164.2XP_030109024.1  R3H domain-containing protein 1 isoform X14

      Conserved Domains (4) summary
      cd02642
      Location:123184
      R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
      PTZ00440
      Location:8345
      PTZ00440; reticulocyte binding protein 2-like protein; Provisional
      pfam03157
      Location:344754
      Glutenin_hmw; High molecular weight glutenin subunit
      pfam12752
      Location:207258
      SUZ; SUZ domain
    21. XM_030253181.2XP_030109041.1  R3H domain-containing protein 1 isoform X16

      Conserved Domains (4) summary
      cd02642
      Location:123184
      R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
      PTZ00440
      Location:8345
      PTZ00440; reticulocyte binding protein 2-like protein; Provisional
      pfam09606
      Location:528814
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam12752
      Location:207258
      SUZ; SUZ domain
    22. XM_036163897.1XP_036019790.1  R3H domain-containing protein 1 isoform X17

      Conserved Domains (1) summary
      pfam12752
      Location:3889
      SUZ; SUZ domain
    23. XM_030253144.2XP_030109004.1  R3H domain-containing protein 1 isoform X4

      Conserved Domains (4) summary
      cd02642
      Location:123184
      R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
      PTZ00440
      Location:8355
      PTZ00440; reticulocyte binding protein 2-like protein; Provisional
      pfam03157
      Location:445855
      Glutenin_hmw; High molecular weight glutenin subunit
      pfam12752
      Location:207258
      SUZ; SUZ domain
    24. XM_017319906.3XP_017175395.1  R3H domain-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      B9EHE8
      Conserved Domains (3) summary
      cd02642
      Location:167228
      R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
      pfam09606
      Location:673959
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam12752
      Location:251302
      SUZ; SUZ domain
    25. XM_036163828.1XP_036019721.1  R3H domain-containing protein 1 isoform X2

      Conserved Domains (2) summary
      cd02642
      Location:167228
      R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
      pfam12752
      Location:251302
      SUZ; SUZ domain

    RNA

    1. XR_001784078.3 RNA Sequence

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