Format

Send to:

Choose Destination
    • Showing Current items.

    Rbm27 RNA binding motif protein 27 [ Mus musculus (house mouse) ]

    Gene ID: 225432, updated on 23-Jun-2021

    Summary

    Official Symbol
    Rbm27provided by MGI
    Official Full Name
    RNA binding motif protein 27provided by MGI
    Primary source
    MGI:MGI:2147194
    See related
    Ensembl:ENSMUSG00000024491
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ps; Psc1; AI043120; mKIAA1311; A730010I06
    Expression
    Ubiquitous expression in testis adult (RPKM 9.4), CNS E11.5 (RPKM 5.2) and 28 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Rbm27 in Genome Data Viewer
    Location:
    18; 18 B3
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (42408386..42474607)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (42275205..42341542)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 18 NC_000084.5 (42435007..42501196)

    Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene leucyl-tRNA synthetase Neighboring gene ribosomal protein S19, pseudogene 4 Neighboring gene predicted gene 4013 Neighboring gene POU domain, class 4, transcription factor 3 Neighboring gene predicted gene, 31438

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    RNA-binding protein 27
    Names
    peri implantation stem cell 1
    peri-implantation stem cell protein 1
    periimplantation stem cell 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_172626.2NP_766214.2  RNA-binding protein 27

      Status: VALIDATED

      Source sequence(s)
      AC125110, AK042613, AY461716
      Consensus CDS
      CCDS50267.1
      UniProtKB/Swiss-Prot
      Q5SFM8
      Related
      ENSMUSP00000089540.6, ENSMUST00000091920.6
      Conserved Domains (4) summary
      pfam00642
      Location:277299
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
      pfam16046
      Location:694828
      FAM76; FAM76 protein
      cl02562
      Location:772
      PWI; PWI domain
      cl17169
      Location:544619
      RRM_SF; RNA recognition motif (RRM) superfamily

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000084.7 Reference GRCm39 C57BL/6J

      Range
      42408386..42474607
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006525863.4XP_006525926.1  RNA-binding protein 27 isoform X1

      See identical proteins and their annotated locations for XP_006525926.1

      UniProtKB/Swiss-Prot
      Q5SFM8
      Related
      ENSMUSP00000158063.2, ENSMUST00000236240.2
      Conserved Domains (6) summary
      PRK03918
      Location:806937
      PRK03918; DNA double-strand break repair ATPase Rad50
      cd12517
      Location:599674
      RRM_RBM27; RNA recognition motif of vertebrate RNA-binding protein 27 (RBM27)
      pfam00642
      Location:277299
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
      pfam15991
      Location:661825
      G_path_suppress; G-protein pathway suppressor
      cl02562
      Location:772
      PWI; PWI domain
      cl17169
      Location:9711013
      RRM_SF; RNA recognition motif (RRM) superfamily
    2. XM_006525864.4XP_006525927.1  RNA-binding protein 27 isoform X2

      Conserved Domains (6) summary
      cd12517
      Location:599674
      RRM_RBM27; RNA recognition motif of vertebrate RNA-binding protein 27 (RBM27)
      pfam00642
      Location:277299
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
      pfam15991
      Location:661773
      G_path_suppress; G-protein pathway suppressor
      cl02562
      Location:772
      PWI; PWI domain
      cl17169
      Location:931973
      RRM_SF; RNA recognition motif (RRM) superfamily
      cl19219
      Location:763844
      FapA; Flagellar Assembly Protein A
    3. XM_017317887.3XP_017173376.1  RNA-binding protein 27 isoform X3

      Conserved Domains (4) summary
      PRK03918
      Location:708839
      PRK03918; DNA double-strand break repair ATPase Rad50
      pfam15991
      Location:563727
      G_path_suppress; G-protein pathway suppressor
      cl02562
      Location:772
      PWI; PWI domain
      cl17169
      Location:501576
      RRM_SF; RNA recognition motif (RRM) superfamily
    4. XM_036161111.1XP_036017004.1  RNA-binding protein 27 isoform X4

      Conserved Domains (3) summary
      PRK03918
      Location:653784
      PRK03918; DNA double-strand break repair ATPase Rad50
      cl02562
      Location:772
      PWI; PWI domain
      cl17169
      Location:446521
      RRM_SF; RNA recognition motif (RRM) superfamily
    Support Center