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    Fam13b family with sequence similarity 13, member B [ Mus musculus (house mouse) ]

    Gene ID: 225358, updated on 23-Jun-2021

    Summary

    Official Symbol
    Fam13bprovided by MGI
    Official Full Name
    family with sequence similarity 13, member Bprovided by MGI
    Primary source
    MGI:MGI:2447834
    See related
    Ensembl:ENSMUSG00000036501
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AW060714; AW546153; 2610024E20Rik
    Expression
    Ubiquitous expression in CNS E18 (RPKM 15.4), whole brain E14.5 (RPKM 11.7) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Fam13b in Genome Data Viewer
    Location:
    18; 18 B1
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (34573624..34656096, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (34440571..34523047, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 18 NC_000084.5 (34602005..34666477, complement)

    Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene receptor accessory protein 5 Neighboring gene polycystic kidney disease 2-like 2 Neighboring gene SET translocation pseudogene Neighboring gene wingless-type MMTV integration site family, member 8A Neighboring gene NME/NM23 family member 5

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC37079

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_146084.1NP_666196.1  protein FAM13B

      Status: PROVISIONAL

      Source sequence(s)
      BC031465
      Consensus CDS
      CCDS29128.1
      UniProtKB/Swiss-Prot
      Q8K2H3
      Related
      ENSMUSP00000038199.7, ENSMUST00000040506.8
      Conserved Domains (1) summary
      cd04393
      Location:19205
      RhoGAP_FAM13A1a; RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active ...

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000084.7 Reference GRCm39 C57BL/6J

      Range
      34573624..34656096 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006525849.4XP_006525912.1  protein FAM13B isoform X1

      Conserved Domains (2) summary
      cd04393
      Location:19205
      RhoGAP_FAM13A1a; RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound ...
      pfam11719
      Location:566645
      Drc1-Sld2; DNA replication and checkpoint protein
    2. XM_006525850.4XP_006525913.1  protein FAM13B isoform X2

      Conserved Domains (2) summary
      cd04393
      Location:19205
      RhoGAP_FAM13A1a; RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound ...
      pfam11719
      Location:544621
      Drc1-Sld2; DNA replication and checkpoint protein
    3. XM_030250431.1XP_030106291.1  protein FAM13B isoform X8

      Conserved Domains (2) summary
      cd04393
      Location:19205
      RhoGAP_FAM13A1a; RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound ...
      pfam11719
      Location:512589
      Drc1-Sld2; DNA replication and checkpoint protein
    4. XM_036161109.1XP_036017002.1  protein FAM13B isoform X16

      Conserved Domains (2) summary
      cd04393
      Location:19205
      RhoGAP_FAM13A1a; RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound ...
      cl26235
      Location:733772
      RecQL4_SLD2_NTD; N-terminal homeodomain-like domain of metazoan RecQ protein-like 4 (RecQL4), fungal DNA replication regulator SLD2 and similar proteins
    5. XM_030250435.1XP_030106295.1  protein FAM13B isoform X13

      Conserved Domains (1) summary
      cl26235
      Location:603642
      RecQL4_SLD2_NTD; N-terminal homeodomain-like domain of metazoan RecQ protein-like 4 (RecQL4), fungal DNA replication regulator SLD2 and similar proteins
    6. XM_030250434.1XP_030106294.1  protein FAM13B isoform X13

      Conserved Domains (1) summary
      cl26235
      Location:603642
      RecQL4_SLD2_NTD; N-terminal homeodomain-like domain of metazoan RecQ protein-like 4 (RecQL4), fungal DNA replication regulator SLD2 and similar proteins
    7. XM_036161107.1XP_036017000.1  protein FAM13B isoform X13

      Conserved Domains (1) summary
      cl26235
      Location:603642
      RecQL4_SLD2_NTD; N-terminal homeodomain-like domain of metazoan RecQ protein-like 4 (RecQL4), fungal DNA replication regulator SLD2 and similar proteins
    8. XM_036161108.1XP_036017001.1  protein FAM13B isoform X14

      Conserved Domains (1) summary
      cl26235
      Location:555594
      RecQL4_SLD2_NTD; N-terminal homeodomain-like domain of metazoan RecQ protein-like 4 (RecQL4), fungal DNA replication regulator SLD2 and similar proteins
    9. XM_030250433.1XP_030106293.1  protein FAM13B isoform X12

    10. XM_006525854.2XP_006525917.1  protein FAM13B isoform X9

    11. XM_030250432.1XP_030106292.1  protein FAM13B isoform X12

    12. XM_036161106.1XP_036016999.1  protein FAM13B isoform X11

      Conserved Domains (1) summary
      cl26235
      Location:635674
      RecQL4_SLD2_NTD; N-terminal homeodomain-like domain of metazoan RecQ protein-like 4 (RecQL4), fungal DNA replication regulator SLD2 and similar proteins
    13. XM_006525853.2XP_006525916.1  protein FAM13B isoform X9

    14. XM_006525851.2XP_006525914.1  protein FAM13B isoform X3

      Conserved Domains (2) summary
      cd04393
      Location:19205
      RhoGAP_FAM13A1a; RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound ...
      pfam11719
      Location:534613
      Drc1-Sld2; DNA replication and checkpoint protein
    15. XM_036161105.1XP_036016998.1  protein FAM13B isoform X7

      Conserved Domains (2) summary
      cd04393
      Location:19205
      RhoGAP_FAM13A1a; RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound ...
      cl26235
      Location:765804
      RecQL4_SLD2_NTD; N-terminal homeodomain-like domain of metazoan RecQ protein-like 4 (RecQL4), fungal DNA replication regulator SLD2 and similar proteins
    16. XM_017317886.1XP_017173375.1  protein FAM13B isoform X5

      Conserved Domains (2) summary
      cd04393
      Location:19205
      RhoGAP_FAM13A1a; RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound ...
      pfam11719
      Location:544621
      Drc1-Sld2; DNA replication and checkpoint protein
    17. XM_036161104.1XP_036016997.1  protein FAM13B isoform X6

      Conserved Domains (2) summary
      cd04393
      Location:19205
      RhoGAP_FAM13A1a; RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound ...
      cl26235
      Location:787826
      RecQL4_SLD2_NTD; N-terminal homeodomain-like domain of metazoan RecQ protein-like 4 (RecQL4), fungal DNA replication regulator SLD2 and similar proteins
    18. XM_006525852.3XP_006525915.1  protein FAM13B isoform X4

      Conserved Domains (2) summary
      cd04393
      Location:19205
      RhoGAP_FAM13A1a; RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound ...
      pfam11719
      Location:566645
      Drc1-Sld2; DNA replication and checkpoint protein
    19. XM_006525848.2XP_006525911.1  protein FAM13B isoform X1

      Conserved Domains (2) summary
      cd04393
      Location:19205
      RhoGAP_FAM13A1a; RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound ...
      pfam11719
      Location:566645
      Drc1-Sld2; DNA replication and checkpoint protein
    20. XM_006525858.2XP_006525921.1  protein FAM13B isoform X15

    21. XM_006525857.2XP_006525920.1  protein FAM13B isoform X15

    22. XM_006525855.4XP_006525918.1  protein FAM13B isoform X10

      Conserved Domains (2) summary
      cd04393
      Location:19205
      RhoGAP_FAM13A1a; RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound ...
      pfam11719
      Location:566661
      Drc1-Sld2; DNA replication and checkpoint protein
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