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    Fam13b family with sequence similarity 13, member B [ Mus musculus (house mouse) ]

    Gene ID: 225358, updated on 31-Jan-2019

    Summary

    Official Symbol
    Fam13bprovided by MGI
    Official Full Name
    family with sequence similarity 13, member Bprovided by MGI
    Primary source
    MGI:MGI:2447834
    See related
    Ensembl:ENSMUSG00000036501
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AW060714; AW546153; 2610024E20Rik
    Expression
    Ubiquitous expression in CNS E18 (RPKM 15.4), whole brain E14.5 (RPKM 11.7) and 28 other tissues See more
    Orthologs

    Genomic context

    See Fam13b in Genome Data Viewer
    Location:
    18; 18 B1
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 18 NC_000084.6 (34440571..34523047, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 18 NC_000084.5 (34602005..34666477, complement)

    Chromosome 18 - NC_000084.6Genomic Context describing neighboring genes Neighboring gene receptor accessory protein 5 Neighboring gene polycystic kidney disease 2-like 2 Neighboring gene SET translocation pseudogene Neighboring gene wingless-type MMTV integration site family, member 8A Neighboring gene NME/NM23 family member 5

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC37079

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
     
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    signal transduction IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_146084.1NP_666196.1  protein FAM13B

      See identical proteins and their annotated locations for NP_666196.1

      Status: PROVISIONAL

      Source sequence(s)
      BC031465
      Consensus CDS
      CCDS29128.1
      UniProtKB/Swiss-Prot
      Q8K2H3
      Related
      ENSMUSP00000038199.6, ENSMUST00000040506.6
      Conserved Domains (1) summary
      cd04393
      Location:19205
      RhoGAP_FAM13A1a; RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active ...

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000084.6 Reference GRCm38.p4 C57BL/6J

      Range
      34440571..34523047 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006525849.3XP_006525912.1  protein FAM13B isoform X1

      See identical proteins and their annotated locations for XP_006525912.1

      Conserved Domains (1) summary
      cd04393
      Location:19205
      RhoGAP_FAM13A1a; RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active ...
    2. XM_006525854.2XP_006525917.1  protein FAM13B isoform X6

      See identical proteins and their annotated locations for XP_006525917.1

    3. XM_006525853.2XP_006525916.1  protein FAM13B isoform X6

      See identical proteins and their annotated locations for XP_006525916.1

    4. XM_006525851.2XP_006525914.1  protein FAM13B isoform X3

      Conserved Domains (1) summary
      cd04393
      Location:19205
      RhoGAP_FAM13A1a; RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active ...
    5. XM_017317886.1XP_017173375.1  protein FAM13B isoform X5

    6. XM_006525850.2XP_006525913.1  protein FAM13B isoform X2

      Conserved Domains (1) summary
      cd04393
      Location:19205
      RhoGAP_FAM13A1a; RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active ...
    7. XM_006525852.3XP_006525915.1  protein FAM13B isoform X4

      Conserved Domains (1) summary
      cd04393
      Location:19205
      RhoGAP_FAM13A1a; RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active ...
    8. XM_006525848.2XP_006525911.1  protein FAM13B isoform X1

      See identical proteins and their annotated locations for XP_006525911.1

      Conserved Domains (1) summary
      cd04393
      Location:19205
      RhoGAP_FAM13A1a; RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active ...
    9. XM_006525858.2XP_006525921.1  protein FAM13B isoform X8

      See identical proteins and their annotated locations for XP_006525921.1

    10. XM_006525857.2XP_006525920.1  protein FAM13B isoform X8

      See identical proteins and their annotated locations for XP_006525920.1

    11. XM_006525855.3XP_006525918.1  protein FAM13B isoform X7

      Conserved Domains (1) summary
      cd04393
      Location:19205
      RhoGAP_FAM13A1a; RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active ...
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