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    Rprd1a regulation of nuclear pre-mRNA domain containing 1A [ Mus musculus (house mouse) ]

    Gene ID: 225283, updated on 12-Aug-2018

    Summary

    Official Symbol
    Rprd1aprovided by MGI
    Official Full Name
    regulation of nuclear pre-mRNA domain containing 1Aprovided by MGI
    Primary source
    MGI:MGI:2385066
    See related
    Ensembl:ENSMUSG00000040446
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C77387; mKIAA4077
    Expression
    Broad expression in frontal lobe adult (RPKM 6.1), cortex adult (RPKM 5.6) and 25 other tissues See more
    Orthologs

    Genomic context

    See Rprd1a in Genome Data Viewer
    Location:
    18; 18 A2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 18 NC_000084.6 (24484960..24530222, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 18 NC_000084.5 (24643463..24688705, complement)

    Chromosome 18 - NC_000084.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 32547 Neighboring gene RIKEN cDNA 2700062C07 gene Neighboring gene predicted gene, 32436 Neighboring gene solute carrier family 39 (metal ion transporter), member 6 Neighboring gene elongator acetyltransferase complex subunit 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Clone Names

    • KIAA4077, MGC29396, MGC36325

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    dephosphorylation of RNA polymerase II C-terminal domain ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    RNA polymerase II, holoenzyme ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    regulation of nuclear pre-mRNA domain-containing protein 1A
    Names
    cyclin-dependent kinase inhibitor 2B-related protein
    p15INK4B-related protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001360807.1NP_001347736.1  regulation of nuclear pre-mRNA domain-containing protein 1A

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 3' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      AC125096, AC131713
      Conserved Domains (2) summary
      smart00582
      Location:8129
      RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
      pfam16566
      Location:165309
      CREPT; Cell-cycle alteration and expression-elevated protein in tumor
    2. NM_144861.2NP_659110.1  regulation of nuclear pre-mRNA domain-containing protein 1A

      See identical proteins and their annotated locations for NP_659110.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      AK220475
      Consensus CDS
      CCDS29102.1
      UniProtKB/Swiss-Prot
      Q8VDS4
      Related
      ENSMUSP00000043618.3, ENSMUST00000046206.3
      Conserved Domains (2) summary
      smart00582
      Location:8129
      RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
      pfam16566
      Location:165309
      CREPT; Cell-cycle alteration and expression-elevated protein in tumor

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000084.6 Reference GRCm38.p4 C57BL/6J

      Range
      24484960..24530222 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006525825.3XP_006525888.1  regulation of nuclear pre-mRNA domain-containing protein 1A isoform X1

      See identical proteins and their annotated locations for XP_006525888.1

      UniProtKB/Swiss-Prot
      Q8VDS4
      Conserved Domains (2) summary
      smart00582
      Location:8129
      RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
      pfam16566
      Location:165309
      CREPT; Cell-cycle alteration and expression-elevated protein in tumor
    2. XM_006525824.3XP_006525887.1  regulation of nuclear pre-mRNA domain-containing protein 1A isoform X1

      UniProtKB/Swiss-Prot
      Q8VDS4
      Conserved Domains (2) summary
      smart00582
      Location:8129
      RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
      pfam16566
      Location:165309
      CREPT; Cell-cycle alteration and expression-elevated protein in tumor
    3. XM_011246895.2XP_011245197.1  regulation of nuclear pre-mRNA domain-containing protein 1A isoform X2

      Conserved Domains (2) summary
      smart00582
      Location:8129
      RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
      pfam16566
      Location:165263
      CREPT; Cell-cycle alteration and expression-elevated protein in tumour
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