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    D17Wsu92e DNA segment, Chr 17, Wayne State University 92, expressed [ Mus musculus (house mouse) ]

    Gene ID: 224647, updated on 8-Oct-2018

    Summary

    Official Symbol
    D17Wsu92eprovided by MGI
    Official Full Name
    DNA segment, Chr 17, Wayne State University 92, expressedprovided by MGI
    Primary source
    MGI:MGI:106281
    See related
    Ensembl:ENSMUSG00000056692 Vega:OTTMUSG00000022177
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C80239; AU020189; C030010A15
    Expression
    Ubiquitous expression in kidney adult (RPKM 61.3), liver adult (RPKM 60.3) and 28 other tissues See more
    Orthologs

    Genomic context

    See D17Wsu92e in Genome Data Viewer
    Location:
    17 A3.3; 17 14.59 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 17 NC_000083.6 (27751232..27820542, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (27888180..27957487, complement)

    Chromosome 17 - NC_000083.6Genomic Context describing neighboring genes Neighboring gene protein kinase C and casein kinase substrate in neurons 1 Neighboring gene SAM pointed domain containing ets transcription factor Neighboring gene ribosomal protein S2, pseudogene 9 Neighboring gene U1 small nuclear ribonucleoprotein C Neighboring gene UHRF1 (ICBP90) binding protein 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    ubiquitin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    macroautophagy IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    autophagosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    phagophore assembly site IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    uncharacterized protein C6orf106 homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033279.3NP_001028451.2  uncharacterized protein C6orf106 homolog isoform 1

      See identical proteins and their annotated locations for NP_001028451.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
      Source sequence(s)
      AC131799, AK161603
      Consensus CDS
      CCDS28569.1
      UniProtKB/Swiss-Prot
      Q3TT38
      Related
      ENSMUSP00000110513.2, OTTMUSP00000025062, ENSMUST00000114863.9, OTTMUST00000052768
      Conserved Domains (2) summary
      cd14349
      Location:2364
      UBA_CF106; UBA-like domain found in uncharacterized protein C6orf106 and similar proteins
      cd14947
      Location:71180
      NBR1_like; Functionally uncharacterized domain in neighbor of Brca1 Gene 1 and related proteins
    2. NM_001044719.2NP_001038184.1  uncharacterized protein C6orf106 homolog isoform 2

      See identical proteins and their annotated locations for NP_001038184.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate in-frame splice site, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
      Source sequence(s)
      AC131799, BC137573
      Consensus CDS
      CCDS37523.1
      UniProtKB/TrEMBL
      B2KF54
      Related
      ENSMUSP00000110509.1, OTTMUSP00000026858, ENSMUST00000114859.8, OTTMUST00000055965
      Conserved Domains (2) summary
      cd14349
      Location:2364
      UBA_CF106; UBA-like domain found in uncharacterized protein C6orf106 and similar proteins
      cd14947
      Location:71180
      NBR1_like; Functionally uncharacterized domain in neighbor of Brca1 Gene 1 and related proteins
    3. NM_001271511.1NP_001258440.1  uncharacterized protein C6orf106 homolog isoform 3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks an alternate exon, which results in a frameshift, compared to variant 1. The encoded isoform (3) is shorter and has a distinct C-terminus, compared to variant 1.
      Source sequence(s)
      AC131799, AK161603, BY755073
      UniProtKB/Swiss-Prot
      Q3TT38
      Related
      ENSMUSP00000156684.1, ENSMUST00000233508.1
      Conserved Domains (2) summary
      cd14349
      Location:2364
      UBA_CF106; UBA-like domain found in uncharacterized protein C6orf106 and similar proteins
      cd14947
      Location:71170
      NBR1_like; Functionally uncharacterized domain in neighbor of Brca1 Gene 1 and related proteins

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000083.6 Reference GRCm38.p4 C57BL/6J

      Range
      27751232..27820542 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCm38.p4 NOD/ShiLtJ

    Genomic

    1. NT_187005.1 Reference GRCm38.p4 NOD/ShiLtJ

      Range
      441164..510475 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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