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    Bnip1 BCL2/adenovirus E1B interacting protein 1 [ Mus musculus (house mouse) ]

    Gene ID: 224630, updated on 31-Jan-2019

    Summary

    Official Symbol
    Bnip1provided by MGI
    Official Full Name
    BCL2/adenovirus E1B interacting protein 1provided by MGI
    Primary source
    MGI:MGI:109328
    See related
    Ensembl:ENSMUSG00000024191
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Sec20; 2010005M06Rik; 5930429G21Rik
    Expression
    Ubiquitous expression in limb E14.5 (RPKM 6.5), CNS E18 (RPKM 6.4) and 28 other tissues See more
    Orthologs

    Genomic context

    See Bnip1 in Genome Data Viewer
    Location:
    17; 17 A3.3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 17 NC_000083.6 (26781079..26792521)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (26918024..26929466)

    Chromosome 17 - NC_000083.6Genomic Context describing neighboring genes Neighboring gene ATPase, H+ transporting, lysosomal V0 subunit E Neighboring gene CREB3 regulatory factor Neighboring gene NK2 homeobox 5 Neighboring gene predicted gene, 17382 Neighboring gene polymerase (RNA) II (DNA directed) polypeptide K pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Clone Names

    • MGC41600

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    SNAP receptor activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    apoptotic process ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    endoplasmic reticulum membrane fusion ISO
    Inferred from Sequence Orthology
    more info
     
    endoplasmic reticulum organization ISO
    Inferred from Sequence Orthology
    more info
     
    protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    SNARE complex ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasm ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    endoplasmic reticulum membrane ISO
    Inferred from Sequence Orthology
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    intracellular membrane-bounded organelle ISO
    Inferred from Sequence Orthology
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    mitochondrial membrane ISO
    Inferred from Sequence Orthology
    more info
     
    mitochondrion IEA
    Inferred from Electronic Annotation
    more info
     
    nuclear envelope ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    vesicle transport protein SEC20
    Names
    BCL2/adenovirus E1B 19kDa-interacting protein 1, NIP1
    BCL2/adenovirus E1B interacting protein 1, NIP1
    SNARE protein SEC20
    bnip1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_172149.5NP_742161.4  vesicle transport protein SEC20

      See identical proteins and their annotated locations for NP_742161.4

      Status: VALIDATED

      Source sequence(s)
      AW060311, AY547731, CV560804
      Consensus CDS
      CCDS28555.1
      UniProtKB/Swiss-Prot
      Q6QD59
      Related
      ENSMUSP00000015725.8, ENSMUST00000015725.14
      Conserved Domains (1) summary
      cd15865
      Location:132224
      SNARE_SEC20; SNARE motif of SEC20

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000083.6 Reference GRCm38.p4 C57BL/6J

      Range
      26781079..26792521
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006524086.2XP_006524149.1  vesicle transport protein SEC20 isoform X1

      Conserved Domains (1) summary
      cd15865
      Location:45137
      SNARE_SEC20; SNARE motif of SEC20
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