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    Pphln1 periphilin 1 [ Mus musculus (house mouse) ]

    Gene ID: 223828, updated on 17-Aug-2021

    Summary

    Official Symbol
    Pphln1provided by MGI
    Official Full Name
    periphilin 1provided by MGI
    Primary source
    MGI:MGI:1917029
    See related
    Ensembl:ENSMUSG00000036167
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C; CR; HSPC206; HSPC232
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 8.0), limb E14.5 (RPKM 5.7) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Pphln1 in Genome Data Viewer
    Location:
    15; 15 E3
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (93296224..93389794)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (93398345..93491913)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (93228781..93322344)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 26371 Neighboring gene zinc finger CCHC-type and RNA binding motif 1 Neighboring gene predicted gene, 30181 Neighboring gene prickle planar cell polarity protein 1 Neighboring gene predicted gene, 41385

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC27795, 1110063K05Rik, 1600022A19Rik

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    located_in Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in chromosome IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    periphilin-1
    Names
    gastric cancer antigen Ga50

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001083114.1NP_001076583.1  periphilin-1 isoform 3

      See identical proteins and their annotated locations for NP_001076583.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks two alternate in-frame exons in the coding region, compared to variant 1. The encoded isoform (3) is shorter, compared to isoform 1. Both variants 3 and 4 encode the same isoform.
      Source sequence(s)
      AC126556, AK168443
      Consensus CDS
      CCDS37181.1
      UniProtKB/TrEMBL
      G3UWD4
      Related
      ENSMUSP00000104879.4, ENSMUST00000109256.11
      Conserved Domains (1) summary
      pfam11488
      Location:221277
      Lge1; Transcriptional regulatory protein LGE1
    2. NM_001285863.1NP_001272792.1  periphilin-1 isoform 3

      See identical proteins and their annotated locations for NP_001272792.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) differs in the 5' UTR and lacks two alternate in-frame exons in the coding region, compared to variant 1. The encoded isoform (3) is shorter, compared to isoform 1. Both variants 3 and 4 encode the same isoform.
      Source sequence(s)
      AK150904, AK158488, BM899690
      Consensus CDS
      CCDS37181.1
      UniProtKB/TrEMBL
      G3UWD4, Q3TYM7, Q3UBL8
      Related
      ENSMUSP00000131121.2, ENSMUST00000165935.2
      Conserved Domains (1) summary
      pfam11488
      Location:221277
      Lge1; Transcriptional regulatory protein LGE1
    3. NM_001285864.1NP_001272793.1  periphilin-1 isoform 4

      Status: VALIDATED

      Description
      Transcript Variant: This variant (5) lacks alternate in-frame exons in the coding region, compared to variant 1. The encoded isoform (4) is shorter, compared to isoform 1.
      Source sequence(s)
      AK158488, AK168443, BM899690, CF734096
      UniProtKB/TrEMBL
      Q3TYM7
      Conserved Domains (1) summary
      pfam11488
      Location:157233
      Lge1; Transcriptional regulatory protein LGE1
    4. NM_001358748.1NP_001345677.1  periphilin-1 isoform 5

      Status: VALIDATED

      Description
      Transcript Variant: This variant (6) lacks an alternate in-frame exon in the coding region, compared to variant 1. The encoded isoform (5) is shorter, compared to isoform 1.
      Source sequence(s)
      AC126556
      Conserved Domains (1) summary
      pfam11488
      Location:275346
      Lge1; Transcriptional regulatory protein LGE1
    5. NM_001358749.1NP_001345678.1  periphilin-1 isoform 6

      Status: VALIDATED

      Description
      Transcript Variant: This variant (7) contains an alternate exon in the 5' UTR, lacks a portion of the coding region, and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (6) has a distinct N-terminus and is shorter than isoform 1.
      Source sequence(s)
      AC126556
      Conserved Domains (1) summary
      pfam11488
      Location:236307
      Lge1; Transcriptional regulatory protein LGE1
    6. NM_001358750.1NP_001345679.1  periphilin-1 isoform 7

      Status: VALIDATED

      Description
      Transcript Variant: This variant (8) lacks alternate in-frame exons in the coding region, compared to variant 1. The encoded isoform (7) is shorter, compared to isoform 1.
      Source sequence(s)
      AC126556
      Conserved Domains (1) summary
      pfam11488
      Location:166237
      Lge1; Transcriptional regulatory protein LGE1
    7. NM_146062.3NP_666174.2  periphilin-1 isoform 1

      See identical proteins and their annotated locations for NP_666174.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longest isoform (1).
      Source sequence(s)
      AK150904, AK158488, AK168443, BG145871, BM899690
      Consensus CDS
      CCDS27767.1
      UniProtKB/TrEMBL
      G3X959, Q3TYM7, Q3UBL8
      Related
      ENSMUSP00000042762.9, ENSMUST00000049122.16
      Conserved Domains (1) summary
      pfam11488
      Location:291367
      Lge1; Transcriptional regulatory protein LGE1
    8. NM_175363.4NP_780572.1  periphilin-1 isoform 2

      See identical proteins and their annotated locations for NP_780572.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an in-frame exon in the 5' coding region, compared to variant 1. The encoded isoform (2) is shorter, compared to isoform 1.
      Source sequence(s)
      AK150904, AK158488, AK168443, BM899690
      Consensus CDS
      CCDS27768.1
      UniProtKB/Swiss-Prot
      Q8K2H1
      UniProtKB/TrEMBL
      Q3TYM7, Q3UBL8
      Related
      ENSMUSP00000068165.8, ENSMUST00000068457.15
      Conserved Domains (1) summary
      pfam11488
      Location:222298
      Lge1; Transcriptional regulatory protein LGE1

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      93296224..93389794
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036159372.1XP_036015265.1  periphilin-1 isoform X13

      Conserved Domains (1) summary
      pfam11488
      Location:117193
      Lge1; Transcriptional regulatory protein LGE1
    2. XM_030248516.1XP_030104376.1  periphilin-1 isoform X9

      Conserved Domains (1) summary
      pfam11488
      Location:193269
      Lge1; Transcriptional regulatory protein LGE1
    3. XM_017316579.2XP_017172068.2  periphilin-1 isoform X2

      Conserved Domains (1) summary
      pfam11488
      Location:232308
      Lge1; Transcriptional regulatory protein LGE1
    4. XM_006520850.1XP_006520913.1  periphilin-1 isoform X4

      Conserved Domains (1) summary
      pfam11488
      Location:321397
      Lge1; Transcriptional regulatory protein LGE1
    5. XM_036159370.1XP_036015263.1  periphilin-1 isoform X5

      Conserved Domains (1) summary
      pfam11488
      Location:302378
      Lge1; Transcriptional regulatory protein LGE1
    6. XM_030248515.1XP_030104375.1  periphilin-1 isoform X7

      Conserved Domains (1) summary
      pfam11488
      Location:252328
      Lge1; Transcriptional regulatory protein LGE1
    7. XM_017316578.3XP_017172067.2  periphilin-1 isoform X1

      Conserved Domains (1) summary
      pfam11488
      Location:251327
      Lge1; Transcriptional regulatory protein LGE1
    8. XM_006520859.5XP_006520922.1  periphilin-1 isoform X3

      Conserved Domains (1) summary
      pfam11488
      Location:182258
      Lge1; Transcriptional regulatory protein LGE1
    9. XM_036159371.1XP_036015264.1  periphilin-1 isoform X10

      Conserved Domains (1) summary
      pfam11488
      Location:176252
      Lge1; Transcriptional regulatory protein LGE1
    10. XM_006520852.3XP_006520915.1  periphilin-1 isoform X6

      See identical proteins and their annotated locations for XP_006520915.1

      UniProtKB/TrEMBL
      G3X959
      Conserved Domains (1) summary
      pfam11488
      Location:291367
      Lge1; Transcriptional regulatory protein LGE1
    11. XM_006520857.3XP_006520920.1  periphilin-1 isoform X8

      See identical proteins and their annotated locations for XP_006520920.1

      UniProtKB/Swiss-Prot
      Q8K2H1
      UniProtKB/TrEMBL
      Q3UBL8
      Conserved Domains (1) summary
      pfam11488
      Location:222298
      Lge1; Transcriptional regulatory protein LGE1
    12. XM_030248521.2XP_030104381.1  periphilin-1 isoform X13

      Conserved Domains (1) summary
      pfam11488
      Location:117193
      Lge1; Transcriptional regulatory protein LGE1
    13. XM_006520861.4XP_006520924.1  periphilin-1 isoform X10

      Conserved Domains (1) summary
      pfam11488
      Location:176252
      Lge1; Transcriptional regulatory protein LGE1
    14. XM_030248517.2XP_030104377.1  periphilin-1 isoform X11

      Conserved Domains (1) summary
      pfam11488
      Location:157233
      Lge1; Transcriptional regulatory protein LGE1
    15. XM_030248522.2XP_030104382.1  periphilin-1 isoform X14

      Conserved Domains (1) summary
      pfam11488
      Location:119195
      Lge1; Transcriptional regulatory protein LGE1
    16. XM_030248519.2XP_030104379.1  periphilin-1 isoform X12

      Conserved Domains (1) summary
      pfam11488
      Location:159235
      Lge1; Transcriptional regulatory protein LGE1
    17. XM_030248520.1XP_030104380.1  periphilin-1 isoform X12

      Conserved Domains (1) summary
      pfam11488
      Location:159235
      Lge1; Transcriptional regulatory protein LGE1
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