Format

Send to:

Choose Destination
    • Showing Current items.

    Uba52 ubiquitin A-52 residue ribosomal protein fusion product 1 [ Mus musculus (house mouse) ]

    Gene ID: 22186, updated on 5-Sep-2021

    Summary

    Official Symbol
    Uba52provided by MGI
    Official Full Name
    ubiquitin A-52 residue ribosomal protein fusion product 1provided by MGI
    Primary source
    MGI:MGI:98887
    See related
    Ensembl:ENSMUSG00000090137
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ubb; Ubc; Cep52; Gm1863; Rps27a; D8Ertd21; D8Ertd21e
    Expression
    Ubiquitous expression in large intestine adult (RPKM 805.6), colon adult (RPKM 792.3) and 28 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Uba52 in Genome Data Viewer
    Location:
    8 B3.3; 8 34.15 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (70960913..70963067, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (70508263..70510417, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (73032165..73034266, complement)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene cytokine receptor-like factor 1 Neighboring gene required for excision 1-B domain containing Neighboring gene RIKEN cDNA 4930522P08 gene Neighboring gene KxDL motif containing 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC107645

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein tag IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables structural constituent of ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    enables ubiquitin protein ligase binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in modification-dependent protein catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in protein ubiquitination IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytosol TAS
    Traceable Author Statement
    more info
     
    part_of cytosolic large ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytosolic ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    part_of cytosolic small ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    located_in intracellular anatomical structure IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in myelin sheath HDA PubMed 
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm TAS
    Traceable Author Statement
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in synapse EXP
    Inferred from Experiment
    more info
    PubMed 
    located_in synapse IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    ubiquitin-60S ribosomal protein L40
    Names
    60S ribosomal protein L40
    ubiquitin/60S ribosomal fusion protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001348227.1NP_001335156.1  ubiquitin-60S ribosomal protein L40 precursor

      Status: VALIDATED

      Source sequence(s)
      AA271295, AC157774, CK334428
      Consensus CDS
      CCDS22371.1
      UniProtKB/Swiss-Prot
      P62984
      UniProtKB/TrEMBL
      Q5M9K3
      Related
      ENSMUSP00000080608.5, ENSMUST00000081940.11
      Conserved Domains (2) summary
      cd01803
      Location:176
      Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin
      pfam01020
      Location:79126
      Ribosomal_L40e; Ribosomal L40e family
    2. NM_001348228.1NP_001335157.1  ubiquitin-60S ribosomal protein L40 precursor

      Status: VALIDATED

      Source sequence(s)
      AA271295, AC157774, BQ746688
      Consensus CDS
      CCDS22371.1
      UniProtKB/Swiss-Prot
      P62984
      UniProtKB/TrEMBL
      Q5M9K3
      Related
      ENSMUSP00000121149.2, ENSMUST00000129909.8
      Conserved Domains (2) summary
      cd01803
      Location:176
      Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin
      pfam01020
      Location:79126
      Ribosomal_L40e; Ribosomal L40e family
    3. NM_001348229.1NP_001335158.1  ubiquitin-60S ribosomal protein L40 precursor

      Status: VALIDATED

      Source sequence(s)
      AA271295, AC157774, BQ746688, EH108858
      Consensus CDS
      CCDS22371.1
      UniProtKB/Swiss-Prot
      P62984
      UniProtKB/TrEMBL
      Q5M9K3
      Related
      ENSMUSP00000137461.2, ENSMUST00000165126.9
      Conserved Domains (2) summary
      cd01803
      Location:176
      Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin
      pfam01020
      Location:79126
      Ribosomal_L40e; Ribosomal L40e family
    4. NM_019883.4NP_063936.1  ubiquitin-60S ribosomal protein L40 precursor

      See identical proteins and their annotated locations for NP_063936.1

      Status: VALIDATED

      Source sequence(s)
      AA271295, AC157774, AK018726
      Consensus CDS
      CCDS22371.1
      UniProtKB/Swiss-Prot
      P62984
      UniProtKB/TrEMBL
      Q5M9K3
      Related
      ENSMUSP00000120096.2, ENSMUST00000125184.8
      Conserved Domains (2) summary
      cd01803
      Location:176
      Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin
      pfam01020
      Location:79126
      Ribosomal_L40e; Ribosomal L40e family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      70960913..70963067 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center