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    Clptm1l CLPTM1-like [ Mus musculus (house mouse) ]

    Gene ID: 218335, updated on 26-Sep-2022

    Summary

    Official Symbol
    Clptm1lprovided by MGI
    Official Full Name
    CLPTM1-likeprovided by MGI
    Primary source
    MGI:MGI:2442892
    See related
    Ensembl:ENSMUSG00000021610 AllianceGenome:MGI:2442892
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Crr9; CRR9p; C130052I12Rik
    Summary
    Predicted to act upstream of or within apoptotic process. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in embryo; retina; and white fat. Orthologous to human CLPTM1L (CLPTM1 like). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in genital fat pad adult (RPKM 55.3), ovary adult (RPKM 54.4) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Clptm1l in Genome Data Viewer
    Location:
    13; 13 C1
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (73752121..73768758)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (73604002..73620639)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene lysophosphatidylcholine acyltransferase 1 Neighboring gene solute carrier family 6 (neurotransmitter transporter, dopamine), member 3 Neighboring gene Tert 5' regulatory region Neighboring gene telomerase reverse transcriptase Neighboring gene solute carrier family 6 (neurotransmitter transporter), member 18

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (3)  1 citation
    • Endonuclease-mediated (3) 

    General gene information

    Markers

    Homology

    Clone Names

    • MGC36304

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    enables phospholipid scramblase activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within apoptotic process IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in biological_process ND
    No biological Data available
    more info
     
    acts_upstream_of_or_within lipid transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
     
    located_in endoplasmic reticulum membrane ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    lipid scramblase CLPTM1L
    Names
    CLPTM1-like protein
    cisplatin resistance related protein CRR9p
    cisplatin resistance-related protein 9
    cleft lip and palate transmembrane protein 1-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_146047.2NP_666159.2  lipid scramblase CLPTM1L

      See identical proteins and their annotated locations for NP_666159.2

      Status: VALIDATED

      Source sequence(s)
      AC158359, AK032295, AK048357
      Consensus CDS
      CCDS56894.1
      UniProtKB/Swiss-Prot
      Q8BXA5, Q8R0P2
      UniProtKB/TrEMBL
      A0A6P5QQJ6, A0A8C6HGK7
      Related
      ENSMUSP00000022102.8, ENSMUST00000022102.9
      Conserved Domains (1) summary
      pfam05602
      Location:22422
      CLPTM1; Cleft lip and palate transmembrane protein 1 (CLPTM1)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      73752121..73768758
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)