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    Ice1 interactor of little elongation complex ELL subunit 1 [ Mus musculus (house mouse) ]

    Gene ID: 218333, updated on 31-Jan-2019

    Summary

    Official Symbol
    Ice1provided by MGI
    Official Full Name
    interactor of little elongation complex ELL subunit 1provided by MGI
    Primary source
    MGI:MGI:2385865
    See related
    Ensembl:ENSMUSG00000034525
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C77245; mKIAA0947
    Expression
    Ubiquitous expression in CNS E18 (RPKM 34.3), whole brain E14.5 (RPKM 24.9) and 28 other tissues See more
    Orthologs

    Genomic context

    See Ice1 in Genome Data Viewer
    Location:
    13; 13 C1
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 13 NC_000079.6 (70588689..70637840, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (70727567..70776512, complement)

    Chromosome 13 - NC_000079.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 36216 Neighboring gene RIKEN cDNA 1700100L14 gene Neighboring gene predicted gene, 36267 Neighboring gene predicted gene, 40996 Neighboring gene predicted gene, 36377 Neighboring gene predicted gene, 36474

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC27742

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    positive regulation of intracellular protein transport ISO
    Inferred from Sequence Orthology
    more info
     
    positive regulation of protein complex assembly ISO
    Inferred from Sequence Orthology
    more info
     
    positive regulation of transcription by RNA polymerase III ISO
    Inferred from Sequence Orthology
    more info
     
    snRNA transcription by RNA polymerase II ISO
    Inferred from Sequence Orthology
    more info
     
    snRNA transcription by RNA polymerase III ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    Cajal body ISO
    Inferred from Sequence Orthology
    more info
     
    histone locus body ISO
    Inferred from Sequence Orthology
    more info
     
    nuclear body ISO
    Inferred from Sequence Orthology
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    transcription elongation factor complex ISO
    Inferred from Sequence Orthology
    more info
     
    transcriptionally active chromatin ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    little elongation complex subunit 1
    Names
    interactor of little elongator complex ELL subunit 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_144837.3NP_659086.2  little elongation complex subunit 1

      See identical proteins and their annotated locations for NP_659086.2

      Status: VALIDATED

      Source sequence(s)
      AC113508
      Consensus CDS
      CCDS49309.1
      UniProtKB/Swiss-Prot
      E9Q286
      Related
      ENSMUSP00000036482.5, ENSMUST00000043493.6
      Conserved Domains (2) summary
      pfam13870
      Location:53185
      DUF4201; Domain of unknown function (DUF4201)
      cl09810
      Location:26180
      DUF2031; Protein of unknown function (DUF2031)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000079.6 Reference GRCm38.p4 C57BL/6J

      Range
      70588689..70637840 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_382437.3 RNA Sequence

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