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    Ice1 interactor of little elongation complex ELL subunit 1 [ Mus musculus (house mouse) ]

    Gene ID: 218333, updated on 23-Jun-2021

    Summary

    Official Symbol
    Ice1provided by MGI
    Official Full Name
    interactor of little elongation complex ELL subunit 1provided by MGI
    Primary source
    MGI:MGI:2385865
    See related
    Ensembl:ENSMUSG00000034525
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C77245; mKIAA0947
    Expression
    Ubiquitous expression in CNS E18 (RPKM 34.3), whole brain E14.5 (RPKM 24.9) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Ice1 in Genome Data Viewer
    Location:
    13; 13 C1
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (70736808..70785958, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (70588688..70637839, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (70727567..70776512, complement)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 36216 Neighboring gene RIKEN cDNA 1700100L14 gene Neighboring gene predicted gene, 36267 Neighboring gene predicted gene, 40996 Neighboring gene predicted gene, 36377 Neighboring gene predicted gene, 36474 Neighboring gene predicted gene, 36426

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC27742

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein-macromolecule adaptor activity ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in Cajal body ISO
    Inferred from Sequence Orthology
    more info
     
    located_in histone locus body ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nuclear body ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    part_of transcription elongation factor complex ISO
    Inferred from Sequence Orthology
    more info
     
    located_in transcriptionally active chromatin ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    little elongation complex subunit 1
    Names
    interactor of little elongator complex ELL subunit 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_144837.3NP_659086.2  little elongation complex subunit 1

      See identical proteins and their annotated locations for NP_659086.2

      Status: VALIDATED

      Source sequence(s)
      AC113508
      Consensus CDS
      CCDS49309.1
      UniProtKB/Swiss-Prot
      E9Q286
      Related
      ENSMUSP00000036482.6, ENSMUST00000043493.7
      Conserved Domains (2) summary
      pfam13870
      Location:53185
      DUF4201; Domain of unknown function (DUF4201)
      cl09810
      Location:26180
      DUF2031; Protein of unknown function (DUF2031)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      70736808..70785958 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030247229.2XP_030103089.1  little elongation complex subunit 1 isoform X1

      Conserved Domains (1) summary
      cl38910
      Location:17291754
      ATP-synt_F1_V1_A1_AB_FliI_C; ATP synthase, alpha/beta subunits of F1/V1/A1 complex, flagellum-specific ATPase FliI, C-terminal domain

    RNA

    1. XR_382437.5 RNA Sequence

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