Format

Send to:

Choose Destination
    • Showing Current items.

    Fam120a family with sequence similarity 120, member A [ Mus musculus (house mouse) ]

    Gene ID: 218236, updated on 31-Jan-2019

    Summary

    Official Symbol
    Fam120aprovided by MGI
    Official Full Name
    family with sequence similarity 120, member Aprovided by MGI
    Primary source
    MGI:MGI:2446163
    See related
    Ensembl:ENSMUSG00000038014
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ossa; C9orf10
    Expression
    Ubiquitous expression in colon adult (RPKM 53.9), ovary adult (RPKM 52.9) and 28 other tissues See more

    Genomic context

    See Fam120a in Genome Data Viewer
    Location:
    13; 13 A5
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 13 NC_000079.6 (48879216..48967877, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (48974585..49063197, complement)

    Chromosome 13 - NC_000079.6Genomic Context describing neighboring genes Neighboring gene PHD finger protein 2 Neighboring gene PHD finger protein 2, opposite strand 1 Neighboring gene family with sequence similarity 120A, opposite strand Neighboring gene kinesin family member 11 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • KIAA0183

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    constitutive coactivator of PPAR-gamma-like protein 1
    Names
    family with sequence similarity 120A
    oxidative stress-associated Src activator

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033268.2NP_001028440.2  constitutive coactivator of PPAR-gamma-like protein 1

      See identical proteins and their annotated locations for NP_001028440.2

      Status: VALIDATED

      Source sequence(s)
      AC109249, CT010439
      Consensus CDS
      CCDS49259.1
      UniProtKB/Swiss-Prot
      Q6A0A9
      Related
      ENSMUSP00000053877.6, ENSMUST00000060805.6

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000079.6 Reference GRCm38.p4 C57BL/6J

      Range
      48879216..48967877 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001780775.1 RNA Sequence

    2. XR_001780776.1 RNA Sequence

    3. XR_001780774.1 RNA Sequence

    Support Center