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    Heatr1 HEAT repeat containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 217995, updated on 23-Jun-2021

    Summary

    Official Symbol
    Heatr1provided by MGI
    Official Full Name
    HEAT repeat containing 1provided by MGI
    Primary source
    MGI:MGI:2442524
    See related
    Ensembl:ENSMUSG00000050244
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AA517551; BC019693; B130016L12Rik
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 6.1), liver E14 (RPKM 3.9) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Heatr1 in Genome Data Viewer
    Location:
    13 A1; 13 4.56 cM
    Exon count:
    45
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (12410256..12453774)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (12395375..12438893)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (12487642..12531160)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene actinin alpha 2 Neighboring gene predicted gene, 40667 Neighboring gene predicted gene 5445 Neighboring gene predicted gene 5928 Neighboring gene lectin, galactose binding, soluble 8 Neighboring gene EDAR (ectodysplasin-A receptor)-associated death domain Neighboring gene VISTA enhancer mm1376

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC30806

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables snoRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    part_of 90S preribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in fibrillar center ISO
    Inferred from Sequence Orthology
    more info
     
    located_in mitochondrion ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    part_of small-subunit processome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of t-UTP complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    HEAT repeat-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_144835.4NP_659084.3  HEAT repeat-containing protein 1

      See identical proteins and their annotated locations for NP_659084.3

      Status: VALIDATED

      Source sequence(s)
      AC154221
      Consensus CDS
      CCDS26240.1
      UniProtKB/TrEMBL
      G3X9B1
      Related
      ENSMUSP00000054084.9, ENSMUST00000059270.10
      Conserved Domains (2) summary
      smart01036
      Location:18562009
      BP28CT; BP28CT (NUC211) domain
      pfam12397
      Location:238354
      U3snoRNP10; U3 small nucleolar RNA-associated protein 10

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      12410256..12453774
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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