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    Clba1 clathrin binding box of aftiphilin containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 217887, updated on 31-Jan-2019

    Summary

    Official Symbol
    Clba1provided by MGI
    Official Full Name
    clathrin binding box of aftiphilin containing 1provided by MGI
    Primary source
    MGI:MGI:2443738
    See related
    Ensembl:ENSMUSG00000037594
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AW050009; Flj20080; C130001I08Rik
    Expression
    Broad expression in testis adult (RPKM 34.3), kidney adult (RPKM 8.2) and 16 other tissues See more
    Orthologs

    Genomic context

    See Clba1 in Genome Data Viewer
    Location:
    12 F1; 12 61.2 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 12 NC_000078.6 (112808975..112816245)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (114047186..114054456)

    Chromosome 12 - NC_000078.6Genomic Context describing neighboring genes Neighboring gene phospholipase D family, member 4 Neighboring gene AHNAK nucleoprotein 2 Neighboring gene predicted gene, 40588 Neighboring gene cell division cycle associated 4 Neighboring gene G protein-coupled receptor 132 Neighboring gene predicted gene, 30461

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    clathrin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    intracellular transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    AP-1 adaptor complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    trans-Golgi network membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    uncharacterized protein CLBA1
    Names
    clathrin-binding box of aftiphilin-containing protein 1
    uncharacterized protein C14orf79 homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_145450.3NP_663425.2  uncharacterized protein CLBA1

      See identical proteins and their annotated locations for NP_663425.2

      Status: PREDICTED

      Source sequence(s)
      AK081297
      Consensus CDS
      CCDS49192.1
      UniProtKB/Swiss-Prot
      Q8BHN9
      Related
      ENSMUSP00000038002.3, ENSMUST00000037014.10
      Conserved Domains (1) summary
      pfam15045
      Location:189268
      Clathrin_bdg; Clathrin-binding box of Aftiphilin, vesicle trafficking

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000078.6 Reference GRCm38.p4 C57BL/6J

      Range
      112808975..112816245
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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