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    Cep170b centrosomal protein 170B [ Mus musculus (house mouse) ]

    Gene ID: 217882, updated on 8-Aug-2021

    Summary

    Official Symbol
    Cep170bprovided by MGI
    Official Full Name
    centrosomal protein 170Bprovided by MGI
    Primary source
    MGI:MGI:2145043
    See related
    Ensembl:ENSMUSG00000072825
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AW55546; AI466840; AW555464; Kiaa0284; mKIAA0284
    Expression
    Ubiquitous expression in colon adult (RPKM 47.7), ovary adult (RPKM 28.6) and 26 other tissues See more
    Orthologs
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    Genomic context

    See Cep170b in Genome Data Viewer
    Location:
    12 F1; 12 61.2 cM
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (112687950..112713026)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (112721514..112746592)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (113960385..113984802)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene zinc finger and BTB domain containing 42 Neighboring gene predicted gene, 30298 Neighboring gene predicted gene, 30238 Neighboring gene predicted gene, 46382 Neighboring gene microRNA 6940 Neighboring gene transmembrane protein 11 pseudogene Neighboring gene phospholipase D family, member 4

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    located_in microtubule IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    centrosomal protein of 170 kDa protein B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001024602.3NP_001019773.2  centrosomal protein of 170 kDa protein B

      See identical proteins and their annotated locations for NP_001019773.2

      Status: VALIDATED

      Source sequence(s)
      AK147410, AK147612, CJ125191
      Consensus CDS
      CCDS56867.1
      UniProtKB/Swiss-Prot
      Q80U49
      Related
      ENSMUSP00000098580.4, ENSMUST00000101018.11
      Conserved Domains (2) summary
      pfam00498
      Location:2389
      FHA; FHA domain
      pfam15308
      Location:8321510
      CEP170_C; CEP170 C-terminus

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      112687950..112713026
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006515766.5XP_006515829.1  centrosomal protein of 170 kDa protein B isoform X1

      See identical proteins and their annotated locations for XP_006515829.1

      UniProtKB/Swiss-Prot
      Q80U49
      Conserved Domains (2) summary
      pfam00498
      Location:2389
      FHA; FHA domain
      pfam15308
      Location:8321510
      CEP170_C; CEP170 C-terminus
    2. XM_011244096.1XP_011242398.1  centrosomal protein of 170 kDa protein B isoform X2

      See identical proteins and their annotated locations for XP_011242398.1

      UniProtKB/TrEMBL
      B9EIX2
      Related
      ENSMUSP00000152143.2, ENSMUST00000220627.2
      Conserved Domains (2) summary
      pfam00498
      Location:2389
      FHA; FHA domain
      pfam15308
      Location:8321475
      CEP170_C; CEP170 C-terminus
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