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    Baz1a bromodomain adjacent to zinc finger domain 1A [ Mus musculus (house mouse) ]

    Gene ID: 217578, updated on 23-Jun-2021

    Summary

    Official Symbol
    Baz1aprovided by MGI
    Official Full Name
    bromodomain adjacent to zinc finger domain 1Aprovided by MGI
    Primary source
    MGI:MGI:1309478
    See related
    Ensembl:ENSMUSG00000035021
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Acf; Gtl; Acf1; Gtl5; Wcrf18; cbp146; Wcrf180; BC065123; B930060C03
    Expression
    Broad expression in testis adult (RPKM 10.5), liver E14 (RPKM 10.0) and 22 other tissues See more
    Orthologs
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    Genomic context

    See Baz1a in Genome Data Viewer
    Location:
    12; 12 C1
    Exon count:
    28
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (54939774..55061155, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (54892989..55014371, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (55993976..56087323, complement)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene sorting nexin 6 Neighboring gene cofilin 2, muscle Neighboring gene predicted gene, 51983 Neighboring gene predicted gene, 24296 Neighboring gene RIKEN cDNA 2700097O09 gene Neighboring gene predicted gene, 46350 Neighboring gene RNA polymerase II, polypeptide H

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in DNA-dependent DNA replication ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within chromatin remodeling TAS
    Traceable Author Statement
    more info
    PubMed 
    Component Evidence Code Pubs
    part_of CHRAC ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nuclear chromosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    bromodomain adjacent to zinc finger domain protein 1A
    Names
    gene trap locus 5

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_013815.2NP_038843.2  bromodomain adjacent to zinc finger domain protein 1A

      See identical proteins and their annotated locations for NP_038843.2

      Status: VALIDATED

      Source sequence(s)
      AC138767, AC154732, CT030142
      Consensus CDS
      CCDS56838.1
      UniProtKB/TrEMBL
      G3UWZ0
      Related
      ENSMUSP00000133478.2, ENSMUST00000173433.8
      Conserved Domains (8) summary
      cd05504
      Location:14181531
      Bromo_Acf1_like; Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) ...
      PTZ00121
      Location:643795
      PTZ00121; MAEBL; Provisional
      cd15627
      Location:11481193
      PHD_BAZ1A; PHD finger found in bromodomain adjacent to zinc finger domain protein 1A (BAZ1A)
      pfam02791
      Location:423483
      DDT; DDT domain
      pfam05956
      Location:12551437
      APC_basic; APC basic domain
      pfam10537
      Location:23122
      WAC_Acf1_DNA_bd; ATP-utilising chromatin assembly and remodelling N-terminal
      pfam15612
      Location:591635
      WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
      pfam15613
      Location:799925
      WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      54939774..55061155 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006515670.4XP_006515733.1  bromodomain adjacent to zinc finger domain protein 1A isoform X1

      See identical proteins and their annotated locations for XP_006515733.1

      UniProtKB/TrEMBL
      G3UWZ0
      Conserved Domains (8) summary
      cd05504
      Location:14181531
      Bromo_Acf1_like; Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) ...
      PTZ00121
      Location:643795
      PTZ00121; MAEBL; Provisional
      cd15627
      Location:11481193
      PHD_BAZ1A; PHD finger found in bromodomain adjacent to zinc finger domain protein 1A (BAZ1A)
      pfam02791
      Location:423483
      DDT; DDT domain
      pfam05956
      Location:12551437
      APC_basic; APC basic domain
      pfam10537
      Location:23122
      WAC_Acf1_DNA_bd; ATP-utilising chromatin assembly and remodelling N-terminal
      pfam15612
      Location:591635
      WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
      pfam15613
      Location:799925
      WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
    2. XM_006515671.5XP_006515734.1  bromodomain adjacent to zinc finger domain protein 1A isoform X2

      Conserved Domains (8) summary
      cd05504
      Location:13861499
      Bromo_Acf1_like; Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) ...
      PTZ00121
      Location:611763
      PTZ00121; MAEBL; Provisional
      cd15627
      Location:11161161
      PHD_BAZ1A; PHD finger found in bromodomain adjacent to zinc finger domain protein 1A (BAZ1A)
      pfam02791
      Location:423483
      DDT; DDT domain
      pfam05956
      Location:12231405
      APC_basic; APC basic domain
      pfam10537
      Location:23122
      WAC_Acf1_DNA_bd; ATP-utilising chromatin assembly and remodelling N-terminal
      pfam15612
      Location:559603
      WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
      pfam15613
      Location:767893
      WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
    3. XM_030246647.2XP_030102507.1  bromodomain adjacent to zinc finger domain protein 1A isoform X4

      Conserved Domains (6) summary
      cd05504
      Location:9021015
      Bromo_Acf1_like; Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) ...
      PTZ00121
      Location:127279
      PTZ00121; MAEBL; Provisional
      cd15627
      Location:632677
      PHD_BAZ1A; PHD finger found in bromodomain adjacent to zinc finger domain protein 1A (BAZ1A)
      pfam05956
      Location:739906
      APC_basic; APC basic domain
      pfam15612
      Location:75119
      WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
      pfam15613
      Location:283409
      WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
    4. XM_030246646.2XP_030102506.1  bromodomain adjacent to zinc finger domain protein 1A isoform X3

      Conserved Domains (6) summary
      cd05504
      Location:9341047
      Bromo_Acf1_like; Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) ...
      PTZ00121
      Location:159311
      PTZ00121; MAEBL; Provisional
      cd15627
      Location:664709
      PHD_BAZ1A; PHD finger found in bromodomain adjacent to zinc finger domain protein 1A (BAZ1A)
      pfam05956
      Location:771938
      APC_basic; APC basic domain
      pfam15612
      Location:107151
      WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
      pfam15613
      Location:315441
      WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
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