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    Baz1a bromodomain adjacent to zinc finger domain 1A [ Mus musculus (house mouse) ]

    Gene ID: 217578, updated on 31-Jan-2019

    Summary

    Official Symbol
    Baz1aprovided by MGI
    Official Full Name
    bromodomain adjacent to zinc finger domain 1Aprovided by MGI
    Primary source
    MGI:MGI:1309478
    See related
    Ensembl:ENSMUSG00000035021
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Acf1; Gtl5; cbp146; Wcrf180; BC065123; B930060C03
    Expression
    Broad expression in testis adult (RPKM 10.5), liver E14 (RPKM 10.0) and 22 other tissues See more
    Orthologs

    Genomic context

    See Baz1a in Genome Data Viewer
    Location:
    12; 12 C1
    Exon count:
    28
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 12 NC_000078.6 (54892989..55014371, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (55993976..56087323, complement)

    Chromosome 12 - NC_000078.6Genomic Context describing neighboring genes Neighboring gene sorting nexin 6 Neighboring gene cofilin 2, muscle Neighboring gene RIKEN cDNA 2700097O09 gene Neighboring gene DNA-directed RNA polymerases I, II, and III subunit RPABC3 pseudogene Neighboring gene mitochondrial import receptor subunit TOM20 homolog pseudogene Neighboring gene signal recognition particle 54A

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    DNA-dependent DNA replication ISO
    Inferred from Sequence Orthology
    more info
     
    chromatin remodeling TAS
    Traceable Author Statement
    more info
    PubMed 
    Component Evidence Code Pubs
    CHRAC ISO
    Inferred from Sequence Orthology
    more info
     
    nuclear chromosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    bromodomain adjacent to zinc finger domain protein 1A
    Names
    gene trap locus 5

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_013815.2NP_038843.2  bromodomain adjacent to zinc finger domain protein 1A

      See identical proteins and their annotated locations for NP_038843.2

      Status: VALIDATED

      Source sequence(s)
      AC138767, AC154732, CT030142
      Consensus CDS
      CCDS56838.1
      UniProtKB/TrEMBL
      G3UWZ0
      Related
      ENSMUSP00000133478.1, ENSMUST00000173433.7
      Conserved Domains (8) summary
      cd05504
      Location:14181531
      Bromo_Acf1_like; Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) ...
      smart00571
      Location:422483
      DDT; domain in different transcription and chromosome remodeling factors
      cd15627
      Location:11481193
      PHD_BAZ1A; PHD finger found in bromodomain adjacent to zinc finger domain protein 1A (BAZ1A)
      pfam05956
      Location:12551437
      APC_basic; APC basic domain
      pfam09805
      Location:645734
      Nop25; Nucleolar protein 12 (25kDa)
      pfam10537
      Location:23122
      WAC_Acf1_DNA_bd; ATP-utilizing chromatin assembly and remodelling N-terminal
      pfam15612
      Location:592639
      WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
      pfam15614
      Location:891929
      WHIM3; WSTF, HB1, Itc1p, MBD9 motif 3

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000078.6 Reference GRCm38.p4 C57BL/6J

      Range
      54892989..55014371 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006515670.3XP_006515733.1  bromodomain adjacent to zinc finger domain protein 1A isoform X1

      See identical proteins and their annotated locations for XP_006515733.1

      UniProtKB/TrEMBL
      G3UWZ0
      Conserved Domains (8) summary
      cd05504
      Location:14181531
      Bromo_Acf1_like; Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) ...
      smart00571
      Location:422483
      DDT; domain in different transcription and chromosome remodeling factors
      cd15627
      Location:11481193
      PHD_BAZ1A; PHD finger found in bromodomain adjacent to zinc finger domain protein 1A (BAZ1A)
      pfam05956
      Location:12551437
      APC_basic; APC basic domain
      pfam09805
      Location:645734
      Nop25; Nucleolar protein 12 (25kDa)
      pfam10537
      Location:23122
      WAC_Acf1_DNA_bd; ATP-utilizing chromatin assembly and remodelling N-terminal
      pfam15612
      Location:592639
      WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
      pfam15614
      Location:891929
      WHIM3; WSTF, HB1, Itc1p, MBD9 motif 3
    2. XM_006515671.3XP_006515734.1  bromodomain adjacent to zinc finger domain protein 1A isoform X2

      Conserved Domains (8) summary
      cd05504
      Location:13861499
      Bromo_Acf1_like; Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) ...
      smart00571
      Location:422483
      DDT; domain in different transcription and chromosome remodeling factors
      cd15627
      Location:11161161
      PHD_BAZ1A; PHD finger found in bromodomain adjacent to zinc finger domain protein 1A (BAZ1A)
      pfam05956
      Location:12231405
      APC_basic; APC basic domain
      pfam09805
      Location:613702
      Nop25; Nucleolar protein 12 (25kDa)
      pfam10537
      Location:23122
      WAC_Acf1_DNA_bd; ATP-utilizing chromatin assembly and remodelling N-terminal
      pfam15612
      Location:560607
      WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
      pfam15614
      Location:859897
      WHIM3; WSTF, HB1, Itc1p, MBD9 motif 3
    3. XM_011244058.2XP_011242360.1  bromodomain adjacent to zinc finger domain protein 1A isoform X4

      Conserved Domains (6) summary
      cd05504
      Location:9021015
      Bromo_Acf1_like; Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) ...
      cd15627
      Location:632677
      PHD_BAZ1A; PHD finger found in bromodomain adjacent to zinc finger domain protein 1A (BAZ1A)
      pfam05956
      Location:739921
      APC_basic; APC basic domain
      pfam09805
      Location:136218
      Nop25; Nucleolar protein 12 (25kDa)
      pfam15612
      Location:76123
      WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
      pfam15614
      Location:375413
      WHIM3; WSTF, HB1, Itc1p, MBD9 motif 3
    4. XM_006515672.3XP_006515735.1  bromodomain adjacent to zinc finger domain protein 1A isoform X3

      Conserved Domains (6) summary
      cd05504
      Location:9341047
      Bromo_Acf1_like; Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) ...
      cd15627
      Location:664709
      PHD_BAZ1A; PHD finger found in bromodomain adjacent to zinc finger domain protein 1A (BAZ1A)
      pfam05956
      Location:771953
      APC_basic; APC basic domain
      pfam09805
      Location:168250
      Nop25; Nucleolar protein 12 (25kDa)
      pfam15612
      Location:108155
      WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
      pfam15614
      Location:407445
      WHIM3; WSTF, HB1, Itc1p, MBD9 motif 3
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