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    Ubxn2a UBX domain protein 2A [ Mus musculus (house mouse) ]

    Gene ID: 217379, updated on 23-Jun-2021

    Summary

    Official Symbol
    Ubxn2aprovided by MGI
    Official Full Name
    UBX domain protein 2Aprovided by MGI
    Primary source
    MGI:MGI:2442310
    See related
    Ensembl:ENSMUSG00000020634
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ubxd4; 6330407P03Rik
    Expression
    Ubiquitous expression in cerebellum adult (RPKM 10.5), bladder adult (RPKM 7.0) and 27 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Ubxn2a in Genome Data Viewer
    Location:
    12; 12 A1.1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (4926814..4957749, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (4876814..4907553, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (4885838..4914326, complement)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene WD repeat and coiled coil containing Neighboring gene major facilitator superfamily domain containing 2B Neighboring gene ATPase family, AAA domain containing 2B Neighboring gene predicted gene, 23167 Neighboring gene RAB11B, member RAS oncogene family pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    Clone Names

    • MGC7992

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables acetylcholine receptor binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables ubiquitin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cis-Golgi network IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    UBX domain-containing protein 2A
    Names
    UBX domain containing 4
    UBX domain-containing protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_145441.4NP_663416.1  UBX domain-containing protein 2A

      See identical proteins and their annotated locations for NP_663416.1

      Status: VALIDATED

      Source sequence(s)
      CT571254
      Consensus CDS
      CCDS25795.1
      UniProtKB/Swiss-Prot
      Q99KJ0
      Related
      ENSMUSP00000020962.6, ENSMUST00000020962.12
      Conserved Domains (2) summary
      cd01770
      Location:171249
      p47_UBX; p47-like ubiquitin domain
      pfam08059
      Location:66138
      SEP; SEP domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      4926814..4957749 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_004937485.1 RNA Sequence

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