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    Ggnbp2 gametogenetin binding protein 2 [ Mus musculus (house mouse) ]

    Gene ID: 217039, updated on 31-Jan-2019

    Summary

    Official Symbol
    Ggnbp2provided by MGI
    Official Full Name
    gametogenetin binding protein 2provided by MGI
    Primary source
    MGI:MGI:2387356
    See related
    Ensembl:ENSMUSG00000020530
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    DIF-3; C75939; Zfp403; AI451896; D330017P12Rik
    Expression
    Ubiquitous expression in testis adult (RPKM 45.3), liver E14 (RPKM 28.4) and 27 other tissues See more
    Orthologs

    Genomic context

    See Ggnbp2 in Genome Data Viewer
    Location:
    11; 11 C
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 11 NC_000077.6 (84832361..84870779, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (84645863..84684240, complement)

    Chromosome 11 - NC_000077.6Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930502E09 gene Neighboring gene dehydrogenase/reductase (SDR family) member 11 Neighboring gene gametogenetin binding protein 2, opposite strand Neighboring gene phosphatidylinositol glycan anchor biosynthesis, class W Neighboring gene myosin XIX Neighboring gene zinc finger, HIT type 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (2) 
    • Targeted (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytoplasmic vesicle IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    gametogenetin-binding protein 2
    Names
    dioxin inducible factor 3
    gametogenin binding protein 2
    zinc finger protein 403

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001364111.1NP_001351040.1  gametogenetin-binding protein 2 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AL596083, AL645623
    2. NM_001364112.1NP_001351041.1  gametogenetin-binding protein 2 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AL596083, AL645623
    3. NM_001364114.1NP_001351043.1  gametogenetin-binding protein 2 isoform 4

      Status: VALIDATED

      Source sequence(s)
      AL596083, AL645623
    4. NM_001364115.1NP_001351044.1  gametogenetin-binding protein 2 isoform 4

      Status: VALIDATED

      Source sequence(s)
      AL596083, AL645623
    5. NM_153144.3NP_694784.2  gametogenetin-binding protein 2 isoform 3

      See identical proteins and their annotated locations for NP_694784.2

      Status: VALIDATED

      Source sequence(s)
      AB064543, AL645623, AY633741, BE982217
      Consensus CDS
      CCDS36262.1
      UniProtKB/Swiss-Prot
      Q5SV77
      Related
      ENSMUSP00000127584.1, ENSMUST00000172405.7

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000077.6 Reference GRCm38.p4 C57BL/6J

      Range
      84832361..84870779 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017314474.1XP_017169963.1  gametogenetin-binding protein 2 isoform X4

      UniProtKB/Swiss-Prot
      Q5SV77
      Related
      ENSMUSP00000130013.1, ENSMUST00000168434.7
    2. XM_017314473.1XP_017169962.1  gametogenetin-binding protein 2 isoform X3

      UniProtKB/Swiss-Prot
      Q5SV77
      Related
      ENSMUSP00000103716.2, ENSMUST00000108081.8
    3. XM_017314475.1XP_017169964.1  gametogenetin-binding protein 2 isoform X4

      UniProtKB/Swiss-Prot
      Q5SV77
      Related
      ENSMUSP00000098252.3, ENSMUST00000100686.9
    4. XM_017314472.1XP_017169961.1  gametogenetin-binding protein 2 isoform X2

    5. XM_017314471.1XP_017169960.1  gametogenetin-binding protein 2 isoform X1

    6. XM_011248933.2XP_011247235.1  gametogenetin-binding protein 2 isoform X4

      See identical proteins and their annotated locations for XP_011247235.1

      UniProtKB/Swiss-Prot
      Q5SV77
      Related
      ENSMUSP00000117482.2, ENSMUST00000154915.8
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