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    Utp6 UTP6 small subunit processome component [ Mus musculus (house mouse) ]

    Gene ID: 216987, updated on 5-Aug-2018

    Summary

    Official Symbol
    Utp6provided by MGI
    Official Full Name
    UTP6 small subunit processome componentprovided by MGI
    Primary source
    MGI:MGI:2445193
    See related
    Ensembl:ENSMUSG00000035575 Vega:OTTMUSG00000000191
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    HCA66; 4732497O03Rik
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 15.0), placenta adult (RPKM 9.6) and 25 other tissues See more
    Orthologs

    Genomic context

    See Utp6 in Genome Data Viewer
    Location:
    11 B5; 11 47.29 cM
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 11 NC_000077.6 (79933956..79962387, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (79747458..79775889, complement)

    Chromosome 11 - NC_000077.6Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108167316 Neighboring gene phosphoglycerate mutase 1 pseudogene Neighboring gene predicted gene, 30875 Neighboring gene SUZ12 polycomb repressive complex 2 subunit

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC25509

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    snoRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    RNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    rRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    Pwp2p-containing subcomplex of 90S preribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    small-subunit processome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    U3 small nucleolar RNA-associated protein 6 homolog
    Names
    UTP6, small subunit (SSU) processome component, homolog
    hepatocellular carcinoma-associated antigen 66
    multiple hat domains protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_144826.3NP_659075.1  U3 small nucleolar RNA-associated protein 6 homolog

      See identical proteins and their annotated locations for NP_659075.1

      Status: PROVISIONAL

      Source sequence(s)
      AK029151
      Consensus CDS
      CCDS25124.1
      UniProtKB/Swiss-Prot
      Q8VCY6
      Related
      ENSMUSP00000046643.5, OTTMUSP00000000246, ENSMUST00000043152.5, OTTMUST00000000567
      Conserved Domains (2) summary
      COG5191
      Location:1222
      COG5191; Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
      pfam08640
      Location:981
      U3_assoc_6; U3 small nucleolar RNA-associated protein 6

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000077.6 Reference GRCm38.p4 C57BL/6J

      Range
      79933956..79962387 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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