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    Mfap3 microfibrillar-associated protein 3 [ Mus musculus (house mouse) ]

    Gene ID: 216760, updated on 23-Jun-2021

    Summary

    Official Symbol
    Mfap3provided by MGI
    Official Full Name
    microfibrillar-associated protein 3provided by MGI
    Primary source
    MGI:MGI:1924068
    See related
    Ensembl:ENSMUSG00000020522
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AW536327; 2610509F16Rik; 2700079M14Rik
    Expression
    Ubiquitous expression in whole brain E14.5 (RPKM 10.8), CNS E14 (RPKM 10.2) and 28 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Mfap3 in Genome Data Viewer
    Location:
    11; 11 B1.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (57409478..57424643)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (57518652..57533817)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (57332167..57347319)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene ribosomal protein S6 pseudogene Neighboring gene predicted gene, 53706 Neighboring gene family with sequence similarity 114, member A2 Neighboring gene predicted gene, 51895 Neighboring gene RIKEN cDNA 4933424L21 gene Neighboring gene polypeptide N-acetylgalactosaminyltransferase 10

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    microfibril-associated glycoprotein 3
    Names
    novel immunoglobulin domain containing protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_145426.2NP_663401.2  microfibril-associated glycoprotein 3 precursor

      See identical proteins and their annotated locations for NP_663401.2

      Status: VALIDATED

      Source sequence(s)
      AK042988, AL672236, BY203406, CF174749
      Consensus CDS
      CCDS24718.1
      UniProtKB/Swiss-Prot
      Q922T2
      UniProtKB/TrEMBL
      A0A0R4J1C7
      Related
      ENSMUSP00000020830.8, ENSMUST00000020830.14
      Conserved Domains (1) summary
      smart00408
      Location:60123
      IGc2; Immunoglobulin C-2 Type
    2. NM_180599.1NP_850930.1  microfibril-associated glycoprotein 3 precursor

      See identical proteins and their annotated locations for NP_850930.1

      Status: VALIDATED

      Source sequence(s)
      AL672236, CF174749
      Consensus CDS
      CCDS24718.1
      UniProtKB/Swiss-Prot
      Q922T2
      UniProtKB/TrEMBL
      A0A0R4J1C7
      Related
      ENSMUSP00000104477.2, ENSMUST00000108849.8
      Conserved Domains (1) summary
      smart00408
      Location:60123
      IGc2; Immunoglobulin C-2 Type

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      57409478..57424643
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006532851.1XP_006532914.1  microfibril-associated glycoprotein 3 isoform X2

    2. XM_006532850.4XP_006532913.1  microfibril-associated glycoprotein 3 isoform X1

      See identical proteins and their annotated locations for XP_006532913.1

      UniProtKB/Swiss-Prot
      Q922T2
      UniProtKB/TrEMBL
      A0A0R4J1C7
      Conserved Domains (1) summary
      smart00408
      Location:60123
      IGc2; Immunoglobulin C-2 Type
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