Format

Send to:

Choose Destination
    • Showing Current items.

    Ccdc92 coiled-coil domain containing 92 [ Mus musculus (house mouse) ]

    Gene ID: 215707, updated on 31-Jan-2019

    Summary

    Official Symbol
    Ccdc92provided by MGI
    Official Full Name
    coiled-coil domain containing 92provided by MGI
    Primary source
    MGI:MGI:106485
    See related
    Ensembl:ENSMUSG00000037979
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AW050178; D5Bwg0834e
    Expression
    Biased expression in testis adult (RPKM 212.4), cerebellum adult (RPKM 45.1) and 2 other tissues See more
    Orthologs

    Genomic context

    See Ccdc92 in Genome Data Viewer
    Location:
    5 F; 5 63.85 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (124834432..124862221, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (125314802..125342591, complement)

    Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene ATPase, H+ transporting, lysosomal V0 subunit A2 Neighboring gene dynein, axonemal, heavy chain 10 Neighboring gene zinc finger protein 664 Neighboring gene predicted gene, 32449

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC38387

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    centriole IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    centriole ISO
    Inferred from Sequence Orthology
    more info
     
    centrosome ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    intracellular membrane-bounded organelle ISO
    Inferred from Sequence Orthology
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    coiled-coil domain-containing protein 92

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_144819.2NP_659068.1  coiled-coil domain-containing protein 92

      See identical proteins and their annotated locations for NP_659068.1

      Status: PROVISIONAL

      Source sequence(s)
      AK165371
      Consensus CDS
      CCDS19681.1
      UniProtKB/Swiss-Prot
      Q8VDN4
      Related
      ENSMUSP00000038075.7, ENSMUST00000036206.13
      Conserved Domains (2) summary
      pfam14916
      Location:763
      CCDC92; Coiled-coil domain of unknown function
      cl21478
      Location:62134
      ATP-synt_B; ATP synthase B/B' CF(0)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

      Range
      124834432..124862221 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006504287.3XP_006504350.1  coiled-coil domain-containing protein 92 isoform X1

      See identical proteins and their annotated locations for XP_006504350.1

      UniProtKB/Swiss-Prot
      Q8VDN4
      Conserved Domains (2) summary
      pfam14916
      Location:763
      CCDC92; Coiled-coil domain of unknown function
      cl21478
      Location:62134
      ATP-synt_B; ATP synthase B/B' CF(0)
    2. XM_017320799.1XP_017176288.1  coiled-coil domain-containing protein 92 isoform X2

    Support Center