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    Ccdc92 coiled-coil domain containing 92 [ Mus musculus (house mouse) ]

    Gene ID: 215707, updated on 26-Sep-2022

    Summary

    Official Symbol
    Ccdc92provided by MGI
    Official Full Name
    coiled-coil domain containing 92provided by MGI
    Primary source
    MGI:MGI:106485
    See related
    Ensembl:ENSMUSG00000037979 AllianceGenome:MGI:106485
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    D5Bwg0834e
    Summary
    Predicted to enable identical protein binding activity. Predicted to be located in centrosome and nucleoplasm. Predicted to be active in centriole. Is expressed in several structures, including genitourinary system; gut; nervous system; respiratory system; and sensory organ. Orthologous to human CCDC92 (coiled-coil domain containing 92). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in testis adult (RPKM 212.4), cerebellum adult (RPKM 45.1) and 2 other tissues See more
    Orthologs
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    Genomic context

    See Ccdc92 in Genome Data Viewer
    Location:
    5 G1.1; 5 63.85 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (124911496..124939557, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (124834432..124862499, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene ATPase, H+ transporting, lysosomal V0 subunit A2 Neighboring gene dynein, axonemal, heavy chain 10 Neighboring gene zinc finger protein 664 Neighboring gene predicted gene, 32449

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 
    • Endonuclease-mediated (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC38387

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    acts_upstream_of_or_within immune system process IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within innate immune response IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in centriole IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in centriole ISO
    Inferred from Sequence Orthology
    more info
     
    located_in centrosome ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    located_in intracellular membrane-bounded organelle ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    coiled-coil domain-containing protein 92

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_144819.2NP_659068.1  coiled-coil domain-containing protein 92

      See identical proteins and their annotated locations for NP_659068.1

      Status: PROVISIONAL

      Source sequence(s)
      AK165371
      Consensus CDS
      CCDS19681.1
      UniProtKB/Swiss-Prot
      Q8VDN4
      UniProtKB/TrEMBL
      A0A8C6MS59
      Related
      ENSMUSP00000038075.8, ENSMUST00000036206.14
      Conserved Domains (2) summary
      TIGR04523
      Location:5151
      Mplasa_alph_rch; helix-rich Mycoplasma protein
      pfam14916
      Location:763
      CCDC92; Coiled-coil domain of unknown function

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      124911496..124939557 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006504287.5XP_006504350.1  coiled-coil domain-containing protein 92 isoform X1

      See identical proteins and their annotated locations for XP_006504350.1

      UniProtKB/Swiss-Prot
      Q8VDN4
      UniProtKB/TrEMBL
      A0A8C6MS59
      Conserved Domains (2) summary
      TIGR04523
      Location:5151
      Mplasa_alph_rch; helix-rich Mycoplasma protein
      pfam14916
      Location:763
      CCDC92; Coiled-coil domain of unknown function
    2. XM_017320799.1XP_017176288.1  coiled-coil domain-containing protein 92 isoform X2