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    Csrnp1 cysteine-serine-rich nuclear protein 1 [ Mus musculus (house mouse) ]

    Gene ID: 215418, updated on 31-Jan-2019

    Summary

    Official Symbol
    Csrnp1provided by MGI
    Official Full Name
    cysteine-serine-rich nuclear protein 1provided by MGI
    Primary source
    MGI:MGI:2387989
    See related
    Ensembl:ENSMUSG00000032515
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Axud1; URAX1; taip-3; CSRNP-1; 4931429D10Rik
    Expression
    Broad expression in thymus adult (RPKM 18.0), testis adult (RPKM 16.2) and 19 other tissues See more
    Orthologs

    Genomic context

    See Csrnp1 in Genome Data Viewer
    Location:
    9; 9 F4
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 9 NC_000075.6 (119971163..119985135, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (119880284..119893776, complement)

    Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene WD repeat domain 48 Neighboring gene golgi reassembly stacking protein 1 Neighboring gene tetratricopeptide repeat domain 21A Neighboring gene predicted gene, 33800 Neighboring gene xin actin-binding repeat containing 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    DNA-binding transcription activator activity, RNA polymerase II-specific IDA
    Inferred from Direct Assay
    more info
    PubMed 
    DNA-binding transcription factor activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    sequence-specific DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    apoptotic process IEA
    Inferred from Electronic Annotation
    more info
     
    face morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    platelet-derived growth factor receptor signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    positive regulation of transcription by RNA polymerase II IDA
    Inferred from Direct Assay
    more info
    PubMed 
    post-embryonic development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of transcription, DNA-templated IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    roof of mouth development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    skeletal system morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    cysteine/serine-rich nuclear protein 1
    Names
    AXIN1 up-regulated 1
    TGF-beta induced apoptosis protein 3
    axin-1 up-regulated gene 1 protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001357560.1NP_001344489.1  cysteine/serine-rich nuclear protein 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript. All four variants encode the same protein.
      Source sequence(s)
      AC124662, AK029893
      Conserved Domains (1) summary
      pfam16019
      Location:81302
      CSRNP_N; Cysteine/serine-rich nuclear protein N-terminus
    2. NM_001357561.1NP_001344490.1  cysteine/serine-rich nuclear protein 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. All four variants encode the same protein.
      Source sequence(s)
      AC124662, AK140213
      Conserved Domains (1) summary
      pfam16019
      Location:81302
      CSRNP_N; Cysteine/serine-rich nuclear protein N-terminus
    3. NM_001357562.1NP_001344491.1  cysteine/serine-rich nuclear protein 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) differs in the 5' UTR compared to variant 1. All four variants encode the same protein.
      Source sequence(s)
      AC117245, AC124662
      Conserved Domains (1) summary
      pfam16019
      Location:81302
      CSRNP_N; Cysteine/serine-rich nuclear protein N-terminus
    4. NM_153287.4NP_695019.1  cysteine/serine-rich nuclear protein 1

      See identical proteins and their annotated locations for NP_695019.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. All four variants encode the same protein.
      Source sequence(s)
      AC117245, AC124662
      Consensus CDS
      CCDS23620.1
      UniProtKB/Swiss-Prot
      P59054
      Related
      ENSMUSP00000149214.1, ENSMUST00000215916.1
      Conserved Domains (1) summary
      pfam16019
      Location:81302
      CSRNP_N; Cysteine/serine-rich nuclear protein N-terminus

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000075.6 Reference GRCm38.p4 C57BL/6J

      Range
      119971163..119985135 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011242954.2XP_011241256.1  cysteine/serine-rich nuclear protein 1 isoform X2

      UniProtKB/Swiss-Prot
      P59054
      Conserved Domains (1) summary
      pfam16019
      Location:81302
      CSRNP_N; Cysteine/serine-rich nuclear protein N-terminus
    2. XM_006512037.3XP_006512100.1  cysteine/serine-rich nuclear protein 1 isoform X2

      UniProtKB/Swiss-Prot
      P59054
      Conserved Domains (1) summary
      pfam16019
      Location:81302
      CSRNP_N; Cysteine/serine-rich nuclear protein N-terminus
    3. XM_006512038.2XP_006512101.1  cysteine/serine-rich nuclear protein 1 isoform X2

      UniProtKB/Swiss-Prot
      P59054
      Related
      ENSMUSP00000150628.1, ENSMUST00000214058.1
      Conserved Domains (1) summary
      pfam16019
      Location:81302
      CSRNP_N; Cysteine/serine-rich nuclear protein N-terminus
    4. XM_006512041.3XP_006512104.1  cysteine/serine-rich nuclear protein 1 isoform X2

      See identical proteins and their annotated locations for XP_006512104.1

      UniProtKB/Swiss-Prot
      P59054
      Conserved Domains (1) summary
      pfam16019
      Location:81302
      CSRNP_N; Cysteine/serine-rich nuclear protein N-terminus
    5. XM_006512035.1XP_006512098.1  cysteine/serine-rich nuclear protein 1 isoform X1

      Conserved Domains (1) summary
      pfam16019
      Location:108329
      CSRNP_N; Cysteine/serine-rich nuclear protein N-terminus
    6. XM_006512040.3XP_006512103.1  cysteine/serine-rich nuclear protein 1 isoform X2

      See identical proteins and their annotated locations for XP_006512103.1

      UniProtKB/Swiss-Prot
      P59054
      Conserved Domains (1) summary
      pfam16019
      Location:81302
      CSRNP_N; Cysteine/serine-rich nuclear protein N-terminus
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