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    Diexf digestive organ expansion factor homolog (zebrafish) [ Mus musculus (house mouse) ]

    Gene ID: 215193, updated on 12-Aug-2018

    Summary

    Official Symbol
    Diexfprovided by MGI
    Official Full Name
    digestive organ expansion factor homolog (zebrafish)provided by MGI
    Primary source
    MGI:MGI:2138080
    See related
    Ensembl:ENSMUSG00000016181 Vega:OTTMUSG00000050855
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Def; AA408296; AW045375
    Expression
    Ubiquitous expression in thymus adult (RPKM 6.5), limb E14.5 (RPKM 4.6) and 28 other tissues See more
    Orthologs

    Genomic context

    See Diexf in Genome Data Viewer
    Location:
    1; 1 H6
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 1 NC_000067.6 (193104403..193130251, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (194930597..194956445, complement)

    Chromosome 1 - NC_000067.6Genomic Context describing neighboring genes Neighboring gene synaptotagmin XIV Neighboring gene predicted gene, 39746 Neighboring gene predicted gene, 31406 Neighboring gene predicted gene, 39747 Neighboring gene RIKEN cDNA A130010J15 gene Neighboring gene interferon regulatory factor 6 Neighboring gene TRAF3 interacting protein 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    U3 snoRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    rRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
     
    positive regulation of embryonic development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    protein catabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    protein destabilization ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    small-subunit processome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    digestive organ expansion factor homolog
    Names
    digestive-organ expansion factor homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_145415.2NP_663390.2  digestive organ expansion factor homolog

      See identical proteins and their annotated locations for NP_663390.2

      Status: VALIDATED

      Source sequence(s)
      AK041915, AK052355, AW045375
      Consensus CDS
      CCDS15631.1
      UniProtKB/Swiss-Prot
      Q8BTT6
      UniProtKB/TrEMBL
      A0A0R4J114
      Related
      ENSMUSP00000082691.1, OTTMUSP00000069289, ENSMUST00000085555.6, OTTMUST00000128849
      Conserved Domains (1) summary
      pfam06862
      Location:288763
      UTP25; Utp25, U3 small nucleolar RNA-associated SSU processome protein 25

    RNA

    1. NR_151719.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK041915, AK147251, AL365322, BE945000

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000067.6 Reference GRCm38.p4 C57BL/6J

      Range
      193104403..193130251 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006497250.1XP_006497313.1  digestive organ expansion factor homolog isoform X1

      Conserved Domains (1) summary
      pfam06862
      Location:1466
      UTP25; Utp25, U3 small nucleolar RNA-associated SSU processome protein 25

    RNA

    1. XR_001783764.1 RNA Sequence

    2. XR_373895.2 RNA Sequence

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