Format

Send to:

Choose Destination
    • Showing Current items.

    Ccdc186 coiled-coil domain containing 186 [ Mus musculus (house mouse) ]

    Gene ID: 213993, updated on 9-Feb-2019

    Summary

    Official Symbol
    Ccdc186provided by MGI
    Official Full Name
    coiled-coil domain containing 186provided by MGI
    Primary source
    MGI:MGI:2445022
    See related
    Ensembl:ENSMUSG00000035173
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Otg1; AI159700; 1810028B20Rik; A630007B06Rik
    Expression
    Ubiquitous expression in cerebellum adult (RPKM 5.0), CNS E14 (RPKM 4.5) and 28 other tissues See more
    Orthologs

    Genomic context

    See Ccdc186 in Genome Data Viewer
    Location:
    19; 19 D2
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 19 NC_000085.6 (56787485..56822488, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (56865453..56888173, complement)

    Chromosome 19 - NC_000085.6Genomic Context describing neighboring genes Neighboring gene adrenergic receptor, beta 1 Neighboring gene predicted gene, 32718 Neighboring gene macrophage migration inhibitory factor, pseudogene 9 Neighboring gene tudor domain containing 1 Neighboring gene von Willebrand factor A domain containing 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    response to bacterium IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    coiled-coil domain-containing protein 186
    Names
    oocyte-testis gene 1 protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_170757.2NP_739563.1  coiled-coil domain-containing protein 186

      See identical proteins and their annotated locations for NP_739563.1

      Status: VALIDATED

      Source sequence(s)
      AC158549
      Consensus CDS
      CCDS29921.1
      UniProtKB/Swiss-Prot
      Q8C9S4
      Related
      ENSMUSP00000075454.3, ENSMUST00000076085.3
      Conserved Domains (1) summary
      pfam09728
      Location:315645
      Taxilin; Myosin-like coiled-coil protein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000085.6 Reference GRCm38.p4 C57BL/6J

      Range
      56787485..56822488 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006526851.3XP_006526914.1  coiled-coil domain-containing protein 186 isoform X1

      UniProtKB/Swiss-Prot
      Q8C9S4
      Related
      ENSMUSP00000113457.1, ENSMUST00000118592.7
      Conserved Domains (1) summary
      pfam09728
      Location:315645
      Taxilin; Myosin-like coiled-coil protein
    2. XM_006526852.1XP_006526915.1  coiled-coil domain-containing protein 186 isoform X2

      Conserved Domains (1) summary
      TIGR02168
      Location:42324
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    Support Center