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    9530068E07Rik RIKEN cDNA 9530068E07 gene [ Mus musculus (house mouse) ]

    Gene ID: 213673, updated on 17-Aug-2024

    Summary

    Official Symbol
    9530068E07Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 9530068E07 geneprovided by MGI
    Primary source
    MGI:MGI:2654705
    See related
    Ensembl:ENSMUSG00000036275 AllianceGenome:MGI:2654705
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Kct2
    Summary
    Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human C5orf15 (chromosome 5 open reading frame 15). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in ovary adult (RPKM 94.8), kidney adult (RPKM 89.0) and 28 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See 9530068E07Rik in Genome Data Viewer
    Location:
    11 B1.3; 11 31.86 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (52287255..52299550)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (52396428..52408723)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_29453 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:52132162-52132271 Neighboring gene predicted gene, 30217 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:52152988-52153277 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:52154886-52154995 Neighboring gene STARR-positive B cell enhancer ABC_E11479 Neighboring gene STARR-seq mESC enhancer starr_29458 Neighboring gene voltage-dependent anion channel 1 Neighboring gene STARR-positive B cell enhancer ABC_E3950 Neighboring gene STARR-seq mESC enhancer starr_29464 Neighboring gene 40S ribosomal protein S28-like Neighboring gene elastin-like

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • MGC28751

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    keratinocyte-associated transmembrane protein 2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_153117.2NP_694757.1  keratinocyte-associated transmembrane protein 2 precursor

      See identical proteins and their annotated locations for NP_694757.1

      Status: PROVISIONAL

      Source sequence(s)
      AK079269
      Consensus CDS
      CCDS24672.1
      UniProtKB/Swiss-Prot
      Q5SVC5, Q8K201, Q922L7, Q9CVN1
      UniProtKB/TrEMBL
      Q3U339, Q3ULW9
      Related
      ENSMUSP00000048441.5, ENSMUST00000036952.5
      Conserved Domains (1) summary
      pfam07462
      Location:50168
      MSP1_C; Merozoite surface protein 1 (MSP1) C-terminus

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      52287255..52299550
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)