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    Fbxo42 F-box protein 42 [ Mus musculus (house mouse) ]

    Gene ID: 213499, updated on 23-Jun-2021

    Summary

    Official Symbol
    Fbxo42provided by MGI
    Official Full Name
    F-box protein 42provided by MGI
    Primary source
    MGI:MGI:1924992
    See related
    Ensembl:ENSMUSG00000028920
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    mKIAA1332; 6720460I06Rik
    Expression
    Ubiquitous expression in thymus adult (RPKM 8.6), whole brain E14.5 (RPKM 8.0) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Fbxo42 in Genome Data Viewer
    Location:
    4; 4 D3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (140875216..140931373)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (141147922..141204062)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (140703837..140759977)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene spermatogenesis associated 21 Neighboring gene SUZ RNA binding domain containing 1 Neighboring gene ciliogenesis and planar polarity effector 2 Neighboring gene RIKEN cDNA C630004L07 gene Neighboring gene Rho guanine nucleotide exchange factor (GEF) 19

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_172518.3NP_766106.2  F-box only protein 42

      See identical proteins and their annotated locations for NP_766106.2

      Status: VALIDATED

      Source sequence(s)
      BC058667, BQ177305, BY161466
      Consensus CDS
      CCDS18866.1
      UniProtKB/Swiss-Prot
      Q6PDJ6
      Related
      ENSMUSP00000030757.10, ENSMUST00000030757.10
      Conserved Domains (4) summary
      sd00038
      Location:119168
      Kelch; KELCH repeat [structural motif]
      pfam00906
      Location:317432
      Hepatitis_core; Hepatitis core antigen
      pfam12937
      Location:4782
      F-box-like; F-box-like
      pfam13415
      Location:130182
      Kelch_3; Galactose oxidase, central domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      140875216..140931373
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006538702.5XP_006538765.1  F-box only protein 42 isoform X1

      Conserved Domains (6) summary
      PLN02772
      Location:189276
      PLN02772; guanylate kinase
      sd00038
      Location:135190
      Kelch; KELCH repeat [structural motif]
      pfam00906
      Location:278393
      Hepatitis_core; Hepatitis core antigen
      pfam12937
      Location:4782
      F-box-like
      pfam13854
      Location:190229
      Kelch_5; Kelch motif
      pfam13415
      Location:91143
      Kelch_3; Galactose oxidase, central domain
    2. XM_006538703.5XP_006538766.1  F-box only protein 42 isoform X2

      Conserved Domains (5) summary
      PLN02772
      Location:96183
      PLN02772; guanylate kinase
      sd00038
      Location:4297
      Kelch; KELCH repeat [structural motif]
      pfam00906
      Location:185300
      Hepatitis_core; Hepatitis core antigen
      pfam13854
      Location:97136
      Kelch_5; Kelch motif
      pfam13415
      Location:150
      Kelch_3; Galactose oxidase, central domain
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