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    Phf3 PHD finger protein 3 [ Mus musculus (house mouse) ]

    Gene ID: 213109, updated on 5-Aug-2018

    Summary

    Official Symbol
    Phf3provided by MGI
    Official Full Name
    PHD finger protein 3provided by MGI
    Primary source
    MGI:MGI:2446126
    See related
    Ensembl:ENSMUSG00000048874 Vega:OTTMUSG00000048797
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2310061N19Rik
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 9.6), CNS E14 (RPKM 8.9) and 28 other tissues See more
    Orthologs

    Genomic context

    See Phf3 in Genome Data Viewer
    Location:
    1; 1 A5
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 1 NC_000067.6 (30802342..30873925, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (30859187..30920101, complement)

    Chromosome 1 - NC_000067.6Genomic Context describing neighboring genes Neighboring gene cyclin-dependent kinase 10 pseudogene Neighboring gene predicted gene 2914 Neighboring gene protein tyrosine phosphatase 4a1 Neighboring gene THO complex 4 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • KIAA0244

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081080.1NP_001074549.1  PHD finger protein 3

      See identical proteins and their annotated locations for NP_001074549.1

      Status: VALIDATED

      Source sequence(s)
      AC124469, AC153137
      Consensus CDS
      CCDS35530.1
      UniProtKB/TrEMBL
      B2RQG2
      Related
      ENSMUSP00000085650.3, ENSMUST00000088310.9
      Conserved Domains (3) summary
      cd15638
      Location:697747
      PHD_PHF3; PHD finger found in PHD finger protein 3 (PHF3)
      pfam07500
      Location:9041014
      TFIIS_M; Transcription factor S-II (TFIIS), central domain
      pfam07744
      Location:11881294
      SPOC; SPOC domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000067.6 Reference GRCm38.p4 C57BL/6J

      Range
      30802342..30873925 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011238471.2XP_011236773.1  PHD finger protein 3 isoform X4

      Conserved Domains (3) summary
      cd15638
      Location:609659
      PHD_PHF3; PHD finger found in PHD finger protein 3 (PHF3)
      pfam07500
      Location:816926
      TFIIS_M; Transcription factor S-II (TFIIS), central domain
      pfam07744
      Location:11001206
      SPOC; SPOC domain
    2. XM_011238470.2XP_011236772.1  PHD finger protein 3 isoform X2

      Conserved Domains (3) summary
      cd15638
      Location:650700
      PHD_PHF3; PHD finger found in PHD finger protein 3 (PHF3)
      pfam07500
      Location:857967
      TFIIS_M; Transcription factor S-II (TFIIS), central domain
      pfam07744
      Location:11411247
      SPOC; SPOC domain
    3. XM_006495838.3XP_006495901.1  PHD finger protein 3 isoform X3

      Conserved Domains (3) summary
      cd15638
      Location:643693
      PHD_PHF3; PHD finger found in PHD finger protein 3 (PHF3)
      pfam07500
      Location:850960
      TFIIS_M; Transcription factor S-II (TFIIS), central domain
      pfam07744
      Location:11341240
      SPOC; SPOC domain
    4. XM_006495836.3XP_006495899.1  PHD finger protein 3 isoform X1

      See identical proteins and their annotated locations for XP_006495899.1

      UniProtKB/TrEMBL
      B2RQG2
      Related
      ENSMUSP00000139610.1, OTTMUSP00000067830, ENSMUST00000186733.6, OTTMUST00000124826
      Conserved Domains (3) summary
      cd15638
      Location:697747
      PHD_PHF3; PHD finger found in PHD finger protein 3 (PHF3)
      pfam07500
      Location:9041014
      TFIIS_M; Transcription factor S-II (TFIIS), central domain
      pfam07744
      Location:11881294
      SPOC; SPOC domain
    5. XM_006495840.3XP_006495903.1  PHD finger protein 3 isoform X5

      See identical proteins and their annotated locations for XP_006495903.1

      Conserved Domains (3) summary
      pfam07500
      Location:195305
      TFIIS_M; Transcription factor S-II (TFIIS), central domain
      pfam07744
      Location:479585
      SPOC; SPOC domain
      cl22851
      Location:138
      PHD_SF; PHD finger superfamily
    6. XM_006495839.3XP_006495902.1  PHD finger protein 3 isoform X5

      See identical proteins and their annotated locations for XP_006495902.1

      Conserved Domains (3) summary
      pfam07500
      Location:195305
      TFIIS_M; Transcription factor S-II (TFIIS), central domain
      pfam07744
      Location:479585
      SPOC; SPOC domain
      cl22851
      Location:138
      PHD_SF; PHD finger superfamily
    7. XM_006495841.1XP_006495904.1  PHD finger protein 3 isoform X5

      See identical proteins and their annotated locations for XP_006495904.1

      Conserved Domains (3) summary
      pfam07500
      Location:195305
      TFIIS_M; Transcription factor S-II (TFIIS), central domain
      pfam07744
      Location:479585
      SPOC; SPOC domain
      cl22851
      Location:138
      PHD_SF; PHD finger superfamily
    8. XM_006495837.3XP_006495900.1  PHD finger protein 3 isoform X1

      See identical proteins and their annotated locations for XP_006495900.1

      UniProtKB/TrEMBL
      B2RQG2
      Conserved Domains (3) summary
      cd15638
      Location:697747
      PHD_PHF3; PHD finger found in PHD finger protein 3 (PHF3)
      pfam07500
      Location:9041014
      TFIIS_M; Transcription factor S-II (TFIIS), central domain
      pfam07744
      Location:11881294
      SPOC; SPOC domain

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_025871.1: Suppressed sequence

      Description
      NM_025871.1: This RefSeq was suppressed temporarily based on the calculation that the annotated protein was shorter than a protein or proteins from a putative ortholog.
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