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    Arap2 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 [ Mus musculus (house mouse) ]

    Gene ID: 212285, updated on 31-Jan-2019

    Summary

    Official Symbol
    Arap2provided by MGI
    Official Full Name
    ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2provided by MGI
    Primary source
    MGI:MGI:2684416
    See related
    Ensembl:ENSMUSG00000037999
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm148; Centd1; mKIAA0580
    Expression
    Broad expression in cortex adult (RPKM 7.0), frontal lobe adult (RPKM 6.3) and 24 other tissues See more
    Orthologs

    Genomic context

    See Arap2 in Genome Data Viewer
    Location:
    5; 5 C3.1
    Exon count:
    34
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (62602445..62766177, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (62993684..63157416, complement)

    Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene glucose-6-phosphate dehydrogenase 2 Neighboring gene SEC63-like pseudogene Neighboring gene death domain containing 1 Neighboring gene predicted gene, 30837

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    phosphatidylinositol-3,4,5-trisphosphate binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    positive regulation of GTPase activity IEA
    Inferred from Electronic Annotation
    more info
     
    signal transduction IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 2
    Names
    PARX protein
    centaurin, delta 1
    cnt-d1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_178407.3NP_848494.2  arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 2

      See identical proteins and their annotated locations for NP_848494.2

      Status: VALIDATED

      Source sequence(s)
      AC122231, AC124720, AC135359
      Consensus CDS
      CCDS51506.1
      UniProtKB/TrEMBL
      E9QP44
      Related
      ENSMUSP00000075924.4, ENSMUST00000076623.7
      Conserved Domains (10) summary
      cd09490
      Location:668
      SAM_Arap1,2,3; SAM domain of Arap1,2,3 (angiotensin receptor-associated protein)
      smart00454
      Location:1067
      SAM; Sterile alpha motif
      cd04385
      Location:11121291
      RhoGAP_ARAP; RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ...
      cd13253
      Location:482573
      PH1_ARAP; ArfGAP with RhoGAP domain, ankyrin repeat and PH domain Pleckstrin homology (PH) domain, repeat 1
      cd13254
      Location:583673
      PH2_ARAP; ArfGAP with RhoGAP domain, ankyrin repeat and PH domain Pleckstrin homology (PH) domain, repeat 2
      cd13256
      Location:8901000
      PH3_ARAP; ArfGAP with RhoGAP domain, ankyrin repeat and PH domain Pleckstrin homology (PH) domain, repeat 3
      pfam00169
      Location:482572
      PH; PH domain
      pfam01412
      Location:684799
      ArfGap; Putative GTPase activating protein for Arf
      cl00155
      Location:13281415
      UBQ; Ubiquitin-like proteins
      cl17171
      Location:14261537
      PH-like; Pleckstrin homology-like domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

      Range
      62602445..62766177 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006503829.2XP_006503892.1  arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 2 isoform X3

      Conserved Domains (10) summary
      cd09490
      Location:668
      SAM_Arap1,2,3; SAM domain of Arap1,2,3 (angiotensin receptor-associated protein)
      smart00454
      Location:1067
      SAM; Sterile alpha motif
      cd04385
      Location:11121291
      RhoGAP_ARAP; RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ...
      cd13253
      Location:482573
      PH1_ARAP; ArfGAP with RhoGAP domain, ankyrin repeat and PH domain Pleckstrin homology (PH) domain, repeat 1
      cd13254
      Location:583673
      PH2_ARAP; ArfGAP with RhoGAP domain, ankyrin repeat and PH domain Pleckstrin homology (PH) domain, repeat 2
      cd13256
      Location:8901000
      PH3_ARAP; ArfGAP with RhoGAP domain, ankyrin repeat and PH domain Pleckstrin homology (PH) domain, repeat 3
      pfam00169
      Location:482572
      PH; PH domain
      pfam01412
      Location:684799
      ArfGap; Putative GTPase activating protein for Arf
      cl00155
      Location:13281415
      UBQ; Ubiquitin-like proteins
      cl17171
      Location:14261530
      PH-like; Pleckstrin homology-like domain
    2. XM_011240712.2XP_011239014.1  arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 2 isoform X1

      See identical proteins and their annotated locations for XP_011239014.1

      UniProtKB/TrEMBL
      E9QP44
      Conserved Domains (10) summary
      cd09490
      Location:668
      SAM_Arap1,2,3; SAM domain of Arap1,2,3 (angiotensin receptor-associated protein)
      smart00454
      Location:1067
      SAM; Sterile alpha motif
      cd04385
      Location:11121291
      RhoGAP_ARAP; RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ...
      cd13253
      Location:482573
      PH1_ARAP; ArfGAP with RhoGAP domain, ankyrin repeat and PH domain Pleckstrin homology (PH) domain, repeat 1
      cd13254
      Location:583673
      PH2_ARAP; ArfGAP with RhoGAP domain, ankyrin repeat and PH domain Pleckstrin homology (PH) domain, repeat 2
      cd13256
      Location:8901000
      PH3_ARAP; ArfGAP with RhoGAP domain, ankyrin repeat and PH domain Pleckstrin homology (PH) domain, repeat 3
      pfam00169
      Location:482572
      PH; PH domain
      pfam01412
      Location:684799
      ArfGap; Putative GTPase activating protein for Arf
      cl00155
      Location:13281415
      UBQ; Ubiquitin-like proteins
      cl17171
      Location:14261537
      PH-like; Pleckstrin homology-like domain
    3. XM_006503828.3XP_006503891.1  arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 2 isoform X2

      See identical proteins and their annotated locations for XP_006503891.1

      Conserved Domains (10) summary
      cd09490
      Location:668
      SAM_Arap1,2,3; SAM domain of Arap1,2,3 (angiotensin receptor-associated protein)
      smart00454
      Location:1067
      SAM; Sterile alpha motif
      cd04385
      Location:11121291
      RhoGAP_ARAP; RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ...
      cd13253
      Location:482573
      PH1_ARAP; ArfGAP with RhoGAP domain, ankyrin repeat and PH domain Pleckstrin homology (PH) domain, repeat 1
      cd13254
      Location:583673
      PH2_ARAP; ArfGAP with RhoGAP domain, ankyrin repeat and PH domain Pleckstrin homology (PH) domain, repeat 2
      cd13256
      Location:8901000
      PH3_ARAP; ArfGAP with RhoGAP domain, ankyrin repeat and PH domain Pleckstrin homology (PH) domain, repeat 3
      pfam00169
      Location:482572
      PH; PH domain
      pfam01412
      Location:684799
      ArfGap; Putative GTPase activating protein for Arf
      cl00155
      Location:13051392
      UBQ; Ubiquitin-like proteins
      cl17171
      Location:14031514
      PH-like; Pleckstrin homology-like domain
    4. XM_006503830.3XP_006503893.1  arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 2 isoform X4

      Conserved Domains (7) summary
      cd09490
      Location:668
      SAM_Arap1,2,3; SAM domain of Arap1,2,3 (angiotensin receptor-associated protein)
      smart00454
      Location:1067
      SAM; Sterile alpha motif
      cd13253
      Location:482573
      PH1_ARAP; ArfGAP with RhoGAP domain, ankyrin repeat and PH domain Pleckstrin homology (PH) domain, repeat 1
      cd13254
      Location:583673
      PH2_ARAP; ArfGAP with RhoGAP domain, ankyrin repeat and PH domain Pleckstrin homology (PH) domain, repeat 2
      pfam00169
      Location:482572
      PH; PH domain
      pfam01412
      Location:684799
      ArfGap; Putative GTPase activating protein for Arf
      cl17171
      Location:890998
      PH-like; Pleckstrin homology-like domain
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