Format

Send to:

Choose Destination
    • Showing Current items.

    8030462N17Rik RIKEN cDNA 8030462N17 gene [ Mus musculus (house mouse) ]

    Gene ID: 212163, updated on 23-Feb-2019

    Summary

    Official Symbol
    8030462N17Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 8030462N17 geneprovided by MGI
    Primary source
    MGI:MGI:2444951
    See related
    Ensembl:ENSMUSG00000047466
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Akd2; Ark2N
    Expression
    Ubiquitous expression in cerebellum adult (RPKM 5.2), frontal lobe adult (RPKM 3.7) and 28 other tissues See more
    Orthologs

    Genomic context

    See 8030462N17Rik in Genome Data Viewer
    Location:
    18; 18 E3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 18 NC_000084.6 (77631488..77714489, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 18 NC_000084.5 (77872020..77952749, complement)

    Chromosome 18 - NC_000084.6Genomic Context describing neighboring genes Neighboring gene ring finger protein 165 Neighboring gene predicted gene, 41783 Neighboring gene predicted gene, 41784 Neighboring gene RIKEN cDNA 4930465K10 gene Neighboring gene RIKEN cDNA A330094K24 gene Neighboring gene HAUS augmin-like complex, subunit 1 Neighboring gene ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein C18orf25 homolog
    Names
    arkadia 2

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001368759.1NP_001355688.1  uncharacterized protein C18orf25 homolog isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC102195
    2. NM_178670.4NP_848785.2  uncharacterized protein C18orf25 homolog isoform 1

      See identical proteins and their annotated locations for NP_848785.2

      Status: VALIDATED

      Source sequence(s)
      AC102195
      Consensus CDS
      CCDS29355.1
      UniProtKB/Swiss-Prot
      Q8BH50
      UniProtKB/TrEMBL
      Q0VAW6
      Related
      ENSMUSP00000074225.4, ENSMUST00000074653.4
      Conserved Domains (1) summary
      pfam15303
      Location:67213
      RNF111_N; E3 ubiquitin-protein ligase Arkadia N-terminus

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000084.6 Reference GRCm38.p4 C57BL/6J

      Range
      77631488..77714489 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006526426.1XP_006526489.1  uncharacterized protein C18orf25 homolog isoform X1

      See identical proteins and their annotated locations for XP_006526489.1

      UniProtKB/TrEMBL
      Q0VAW6
      Conserved Domains (1) summary
      pfam15303
      Location:67213
      RNF111_N; E3 ubiquitin-protein ligase Arkadia N-terminus
    2. XM_011247069.2XP_011245371.1  uncharacterized protein C18orf25 homolog isoform X3

      See identical proteins and their annotated locations for XP_011245371.1

      Conserved Domains (1) summary
      pfam15303
      Location:67213
      RNF111_N; E3 ubiquitin-protein ligase Arkadia N-terminus
    3. XM_006526428.2XP_006526491.1  uncharacterized protein C18orf25 homolog isoform X5

    4. XM_011247067.2XP_011245369.1  uncharacterized protein C18orf25 homolog isoform X2

      See identical proteins and their annotated locations for XP_011245369.1

      Conserved Domains (1) summary
      pfam15303
      Location:67213
      RNF111_N; E3 ubiquitin-protein ligase Arkadia N-terminus
    5. XM_011247070.2XP_011245372.1  uncharacterized protein C18orf25 homolog isoform X4

      Conserved Domains (1) summary
      pfam15303
      Location:67213
      RNF111_N; E3 ubiquitin-protein ligase Arkadia N-terminus
    Support Center