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    Depdc7 DEP domain containing 7 [ Mus musculus (house mouse) ]

    Gene ID: 211896, updated on 3-Apr-2018

    Summary

    Official Symbol
    Depdc7provided by MGI
    Official Full Name
    DEP domain containing 7provided by MGI
    Primary source
    MGI:MGI:2139258
    See related
    Ensembl:ENSMUSG00000027173 Vega:OTTMUSG00000014963
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AV216087
    Expression
    Broad expression in placenta adult (RPKM 12.7), liver adult (RPKM 12.4) and 15 other tissues See more
    Orthologs

    Genomic context

    See Depdc7 in Genome Data Viewer
    Location:
    2; 2 E2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 2 NC_000068.7 (104721784..104742801, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (104561941..104582958, complement)

    Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene t-complex 11 like 1 Neighboring gene predicted gene 6306 Neighboring gene protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1, retrogene 1 Neighboring gene glutamine and serine rich 1 Neighboring gene predicted gene, 39898

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Clone Names

    • MGC19163

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    intracellular signal transduction IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    DEP domain-containing protein 7

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_144804.1NP_659053.1  DEP domain-containing protein 7

      See identical proteins and their annotated locations for NP_659053.1

      Status: PROVISIONAL

      Source sequence(s)
      BC013499
      Consensus CDS
      CCDS16492.1
      UniProtKB/Swiss-Prot
      Q91WS7
      Related
      ENSMUSP00000028595.7, OTTMUSP00000015906, ENSMUST00000028595.7, OTTMUST00000035524
      Conserved Domains (2) summary
      cd04405
      Location:194427
      RhoGAP_BRCC3-like; RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain ...
      cd04446
      Location:39133
      DEP_DEPDC4; DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC4-like proteins. DEPDC4 is a DEP domain containing protein of unknown function.

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000068.7 Reference GRCm38.p4 C57BL/6J

      Range
      104721784..104742801 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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