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    Ap1ar adaptor-related protein complex 1 associated regulatory protein [ Mus musculus (house mouse) ]

    Gene ID: 211556, updated on 31-Jan-2019

    Summary

    Official Symbol
    Ap1arprovided by MGI
    Official Full Name
    adaptor-related protein complex 1 associated regulatory proteinprovided by MGI
    Primary source
    MGI:MGI:2384822
    See related
    Ensembl:ENSMUSG00000074238
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C78909; Gadkin; AA407621
    Expression
    Ubiquitous expression in duodenum adult (RPKM 18.9), colon adult (RPKM 18.9) and 28 other tissues See more
    Orthologs

    Genomic context

    See Ap1ar in Genome Data Viewer
    Location:
    3; 3 G2
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 3 NC_000069.6 (127807007..127837518, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (127510182..127540410, complement)

    Chromosome 3 - NC_000069.6Genomic Context describing neighboring genes Neighboring gene alpha-kinase 1 Neighboring gene ribosomal protein L19 pseudogene Neighboring gene TRAF-interacting protein with forkhead-associated domain Neighboring gene predicted gene, 35585 Neighboring gene family with sequence similarity 241, member A

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Homology

    Clone Names

    • MGC7434

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    AP-1 adaptor complex binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    AP-1 adaptor complex binding ISO
    Inferred from Sequence Orthology
    more info
     
    Arp2/3 complex binding ISO
    Inferred from Sequence Orthology
    more info
     
    kinesin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    kinesin binding ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    endosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    endosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    transport vesicle ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    AP-1 complex-associated regulatory protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001346718.2NP_001333647.1  AP-1 complex-associated regulatory protein isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC163391, CA318176, CJ045033, CJ130605
      Consensus CDS
      CCDS84673.1
      UniProtKB/TrEMBL
      A0A0G2JG85
    2. NM_145964.3NP_666076.2  AP-1 complex-associated regulatory protein isoform 1

      See identical proteins and their annotated locations for NP_666076.2

      Status: VALIDATED

      Source sequence(s)
      AC163391, BB611022, CJ130605, CJ169738
      Consensus CDS
      CCDS38629.1
      UniProtKB/TrEMBL
      E9PYF7
      Related
      ENSMUSP00000059669.6, ENSMUST00000051737.7
      Conserved Domains (1) summary
      pfam15745
      Location:24298
      AP1AR; AP-1 complex-associated regulatory protein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000069.6 Reference GRCm38.p4 C57BL/6J

      Range
      127807007..127837518 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006501246.1XP_006501309.1  AP-1 complex-associated regulatory protein isoform X7

      Related
      ENSMUSP00000143466.1, ENSMUST00000200409.4
      Conserved Domains (1) summary
      pfam15745
      Location:24265
      AP1AR; AP-1 complex-associated regulatory protein
    2. XM_006501241.2XP_006501304.1  AP-1 complex-associated regulatory protein isoform X2

      Conserved Domains (1) summary
      pfam15745
      Location:74345
      AP1AR; AP-1 complex-associated regulatory protein
    3. XM_006501244.2XP_006501307.1  AP-1 complex-associated regulatory protein isoform X5

      Conserved Domains (1) summary
      pfam15745
      Location:39310
      AP1AR; AP-1 complex-associated regulatory protein
    4. XM_006501242.1XP_006501305.1  AP-1 complex-associated regulatory protein isoform X3

      Conserved Domains (1) summary
      pfam15745
      Location:99337
      AP1AR; AP-1 complex-associated regulatory protein
    5. XM_006501240.1XP_006501303.1  AP-1 complex-associated regulatory protein isoform X1

      Conserved Domains (1) summary
      pfam15745
      Location:99370
      AP1AR; AP-1 complex-associated regulatory protein
    6. XM_006501245.2XP_006501308.1  AP-1 complex-associated regulatory protein isoform X6

      Conserved Domains (1) summary
      pfam15745
      Location:18289
      AP1AR; AP-1 complex-associated regulatory protein
    7. XM_006501243.2XP_006501306.1  AP-1 complex-associated regulatory protein isoform X4

      Conserved Domains (1) summary
      pfam15745
      Location:53324
      AP1AR; AP-1 complex-associated regulatory protein
    8. XM_006501247.2XP_006501310.1  AP-1 complex-associated regulatory protein isoform X8

      Conserved Domains (1) summary
      pfam15745
      Location:2240
      AP1AR; AP-1 complex-associated regulatory protein
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