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    Sycp3 synaptonemal complex protein 3 [ Mus musculus (house mouse) ]

    Gene ID: 20962, updated on 16-Oct-2021

    Summary

    Official Symbol
    Sycp3provided by MGI
    Official Full Name
    synaptonemal complex protein 3provided by MGI
    Primary source
    MGI:MGI:109542
    See related
    Ensembl:ENSMUSG00000020059
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Cor1; Scp3
    Expression
    Biased expression in testis adult (RPKM 5.3), kidney adult (RPKM 2.4) and 12 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Sycp3 in Genome Data Viewer
    Location:
    10; 10 C1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (88295449..88309098)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (88459587..88473236)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (87922332..87935981)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 40733 Neighboring gene N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits Neighboring gene choline phosphotransferase 1 Neighboring gene myosin binding protein C, slow-type Neighboring gene ribosomal protein L7A pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell cycle IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within cell division IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within cellular response to leukemia inhibitory factor IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    involved_in chiasma assembly IDA
    Inferred from Direct Assay
    more info
    PubMed 
    acts_upstream_of_or_within chiasma assembly IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    involved_in female meiosis chromosome segregation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in female meiosis chromosome separation NAS
    Non-traceable Author Statement
    more info
    PubMed 
    involved_in female meiosis sister chromatid cohesion IDA
    Inferred from Direct Assay
    more info
    PubMed 
    acts_upstream_of_or_within homologous chromosome pairing at meiosis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within lateral element assembly IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    acts_upstream_of_or_within meiotic DNA repair synthesis IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    involved_in meiotic cell cycle IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    acts_upstream_of_or_within meiotic cell cycle IDA
    Inferred from Direct Assay
    more info
    PubMed 
    acts_upstream_of_or_within mitotic cell cycle IDA
    Inferred from Direct Assay
    more info
    PubMed 
    acts_upstream_of_or_within sperm chromatin condensation IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    involved_in spermatid development IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    acts_upstream_of_or_within spermatogenesis IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    involved_in spermatogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in spermatogenesis, exchange of chromosomal proteins ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in synaptonemal complex assembly IDA
    Inferred from Direct Assay
    more info
    PubMed 
    acts_upstream_of_or_within synaptonemal complex assembly IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in chromosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in chromosome, centromeric region IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in condensed chromosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in condensed chromosome, centromeric region IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in condensed nuclear chromosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in lateral element IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in lateral element ISO
    Inferred from Sequence Orthology
    more info
     
    located_in male germ cell nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleoplasm TAS
    Traceable Author Statement
    more info
     
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in synaptonemal complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in synaptonemal complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in synaptonemal complex ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    located_in transverse filament IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    synaptonemal complex protein 3
    Names
    SCP-3

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_011517.2NP_035647.2  synaptonemal complex protein 3

      See identical proteins and their annotated locations for NP_035647.2

      Status: VALIDATED

      Source sequence(s)
      BC138509, BY386732
      Consensus CDS
      CCDS24111.1
      UniProtKB/Swiss-Prot
      P70281
      UniProtKB/TrEMBL
      A2RSE7
      Related
      ENSMUSP00000020252.4, ENSMUST00000020252.10
      Conserved Domains (1) summary
      pfam04803
      Location:103222
      Cor1; Cor1/Xlr/Xmr conserved region

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      88295449..88309098
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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