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    Surf4 surfeit gene 4 [ Mus musculus (house mouse) ]

    Gene ID: 20932, updated on 8-Aug-2021

    Summary

    Official Symbol
    Surf4provided by MGI
    Official Full Name
    surfeit gene 4provided by MGI
    Primary source
    MGI:MGI:98445
    See related
    Ensembl:ENSMUSG00000014867
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Surf; Surf-4; AL033340; AL033373
    Expression
    Ubiquitous expression in duodenum adult (RPKM 218.1), large intestine adult (RPKM 165.7) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Surf4 in Genome Data Viewer
    Location:
    2 A3; 2 19.1 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (26810053..26823793, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (26920041..26933776, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (26775561..26789031, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD36 Neighboring gene ribosomal protein L7A Neighboring gene surfeit gene 1 Neighboring gene surfeit gene 2 Neighboring gene predicted gene, 36591 Neighboring gene serine/threonine kinase-like domain containing 1 Neighboring gene REX4, 3'-5' exonuclease Neighboring gene predicted gene, 36649 Neighboring gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in Golgi organization ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of organelle organization ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
     
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
     
    located_in endoplasmic reticulum-Golgi intermediate compartment ISO
    Inferred from Sequence Orthology
    more info
     
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_011512.3NP_035642.1  surfeit locus protein 4

      See identical proteins and their annotated locations for NP_035642.1

      Status: VALIDATED

      Source sequence(s)
      AK145670, BB854341, DV656434
      Consensus CDS
      CCDS15817.1
      UniProtKB/Swiss-Prot
      Q64310
      UniProtKB/TrEMBL
      Q545Q2
      Related
      ENSMUSP00000015011.4, ENSMUST00000015011.10
      Conserved Domains (1) summary
      pfam02077
      Location:4269
      SURF4; SURF4 family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      26810053..26823793 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006497828.4XP_006497891.1  surfeit locus protein 4 isoform X1

      See identical proteins and their annotated locations for XP_006497891.1

      Conserved Domains (1) summary
      cl21527
      Location:1226
      DoxX
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