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    Sde2 SDE2 telomere maintenance homolog (S. pombe) [ Mus musculus (house mouse) ]

    Gene ID: 208768, updated on 31-Jan-2019

    Summary

    Official Symbol
    Sde2provided by MGI
    Official Full Name
    SDE2 telomere maintenance homolog (S. pombe)provided by MGI
    Primary source
    MGI:MGI:2384788
    See related
    Ensembl:ENSMUSG00000038806
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Ubiquitous expression in liver E14 (RPKM 11.0), CNS E11.5 (RPKM 10.1) and 28 other tissues See more
    Orthologs

    Genomic context

    See Sde2 in Genome Data Viewer
    Location:
    1; 1 H4
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 1 NC_000067.6 (180851151..180868113)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (182781282..182798244)

    Chromosome 1 - NC_000067.6Genomic Context describing neighboring genes Neighboring gene H3 histone, family 3A Neighboring gene RIKEN cDNA G370120E05 gene Neighboring gene polymerase (RNA) II (DNA directed) polypeptide K pseudogene Neighboring gene predicted gene, 18036 Neighboring gene predicted gene, 39714

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC30618

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    damaged DNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    DNA replication IEA
    Inferred from Electronic Annotation
    more info
     
    cell cycle IEA
    Inferred from Electronic Annotation
    more info
     
    cell division IEA
    Inferred from Electronic Annotation
    more info
     
    cellular response to UV ISO
    Inferred from Sequence Orthology
    more info
     
    protein processing ISO
    Inferred from Sequence Orthology
    more info
     
    protein ubiquitination ISO
    Inferred from Sequence Orthology
    more info
     
    regulation of cell cycle arrest ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    replication stress response regulator SDE2
    Names
    UPF0667 protein C1orf55 homolog
    protein SDE2 homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_145943.1NP_666055.1  replication stress response regulator SDE2

      See identical proteins and their annotated locations for NP_666055.1

      Status: PROVISIONAL

      Source sequence(s)
      BC031781
      Consensus CDS
      CCDS15574.1
      UniProtKB/Swiss-Prot
      Q8K1J5
      Related
      ENSMUSP00000037890.6, ENSMUST00000038091.7
      Conserved Domains (2) summary
      pfam13297
      Location:382441
      Telomere_Sde2_2; Telomere stability C-terminal
      cl00155
      Location:69146
      UBQ; Ubiquitin-like proteins

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000067.6 Reference GRCm38.p4 C57BL/6J

      Range
      180851151..180868113
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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