Format

Send to:

Choose Destination
    • Showing Current items.

    Slc25a38 solute carrier family 25, member 38 [ Mus musculus (house mouse) ]

    Gene ID: 208638, updated on 2-Oct-2021

    Summary

    Official Symbol
    Slc25a38provided by MGI
    Official Full Name
    solute carrier family 25, member 38provided by MGI
    Primary source
    MGI:MGI:2384782
    See related
    Ensembl:ENSMUSG00000032519
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AV019094; BC010801; appoptosin
    Expression
    Ubiquitous expression in liver E14.5 (RPKM 24.0), liver E14 (RPKM 21.7) and 28 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Slc25a38 in Genome Data Viewer
    Location:
    9; 9 F4
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (119939428..119953570)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (120110377..120126093)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (120019517..120033439)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene chemokine (C-X3-C motif) receptor 1 Neighboring gene predicted gene, 33858 Neighboring gene chemokine (C-C motif) receptor 8 Neighboring gene predicted gene, 24044 Neighboring gene predicted gene, 26448 Neighboring gene ribosomal protein SA

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 
    • Targeted (1) 

    General gene information

    Markers

    Homology

    Clone Names

    • MGC18873

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables glycine transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in erythrocyte differentiation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in glycine import into mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in mitochondrial inner membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    mitochondrial glycine transporter

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_144793.2NP_659042.1  mitochondrial glycine transporter

      See identical proteins and their annotated locations for NP_659042.1

      Status: VALIDATED

      Source sequence(s)
      AC110091, AK078385, BM115906, CJ159224
      Consensus CDS
      CCDS23622.1
      UniProtKB/Swiss-Prot
      Q91XD8
      Related
      ENSMUSP00000035106.6, ENSMUST00000035106.12
      Conserved Domains (2) summary
      PTZ00169
      Location:51318
      PTZ00169; ADP/ATP transporter on adenylate translocase; Provisional
      pfam00153
      Location:46137
      Mito_carr; Mitochondrial carrier protein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      119939428..119953570
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036154770.1XP_036010663.1  mitochondrial glycine transporter isoform X4

      Conserved Domains (1) summary
      pfam00153
      Location:89176
      Mito_carr; Mitochondrial carrier protein
    2. XM_006512021.4XP_006512084.1  mitochondrial glycine transporter isoform X4

      See identical proteins and their annotated locations for XP_006512084.1

      Conserved Domains (1) summary
      pfam00153
      Location:89176
      Mito_carr; Mitochondrial carrier protein
    3. XM_030244176.2XP_030100036.1  mitochondrial glycine transporter isoform X4

      Conserved Domains (1) summary
      pfam00153
      Location:89176
      Mito_carr; Mitochondrial carrier protein
    4. XM_006512019.5XP_006512082.1  mitochondrial glycine transporter isoform X2

      Conserved Domains (1) summary
      pfam00153
      Location:24115
      Mito_carr; Mitochondrial carrier protein
    5. XM_006512018.3XP_006512081.1  mitochondrial glycine transporter isoform X1

      Conserved Domains (1) summary
      pfam00153
      Location:25116
      Mito_carr; Mitochondrial carrier protein
    6. XM_011242949.3XP_011241251.1  mitochondrial glycine transporter isoform X3

      See identical proteins and their annotated locations for XP_011241251.1

      Conserved Domains (1) summary
      pfam00153
      Location:30113
      Mito_carr; Mitochondrial carrier protein
    7. XM_006512020.3XP_006512083.1  mitochondrial glycine transporter isoform X3

      See identical proteins and their annotated locations for XP_006512083.1

      Conserved Domains (1) summary
      pfam00153
      Location:30113
      Mito_carr; Mitochondrial carrier protein
    8. XM_011242950.4XP_011241252.1  mitochondrial glycine transporter isoform X3

      See identical proteins and their annotated locations for XP_011241252.1

      Conserved Domains (1) summary
      pfam00153
      Location:30113
      Mito_carr; Mitochondrial carrier protein
    Support Center