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    Rsrc2 arginine/serine-rich coiled-coil 2 [ Mus musculus (house mouse) ]

    Gene ID: 208606, updated on 23-Jun-2021

    Summary

    Official Symbol
    Rsrc2provided by MGI
    Official Full Name
    arginine/serine-rich coiled-coil 2provided by MGI
    Primary source
    MGI:MGI:1913489
    See related
    Ensembl:ENSMUSG00000029422
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1500011J06Rik
    Expression
    Biased expression in CNS E11.5 (RPKM 41.6), CNS E14 (RPKM 26.5) and 14 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Rsrc2 in Genome Data Viewer
    Location:
    5; 5 F
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (123866489..123887522, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (123728426..123749429, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (124178439..124199421, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene zinc finger, CCHC domain containing 8 Neighboring gene polymerase (RNA) II (DNA directed) polypeptide K pseudogene Neighboring gene kinetochore associated 1 Neighboring gene hydroxycarboxylic acid receptor 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    arginine/serine-rich coiled-coil protein 2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001005525.2NP_001005525.1  arginine/serine-rich coiled-coil protein 2 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longest isoform (1).
      Source sequence(s)
      AC129582, AW557796, BC132550, BP772863
      Consensus CDS
      CCDS39271.1
      UniProtKB/Swiss-Prot
      A2RTL5
      UniProtKB/TrEMBL
      S4R2L4
      Related
      ENSMUSP00000138691.2, ENSMUST00000182309.8
      Conserved Domains (1) summary
      pfam15477
      Location:354423
      SMAP; Small acidic protein family
    2. NM_001359860.1NP_001346789.1  arginine/serine-rich coiled-coil protein 2 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3), as well as variants 2 and 4, encodes isoform 2.
      Source sequence(s)
      AC129582
      Consensus CDS
      CCDS39272.1
      Conserved Domains (1) summary
      pfam15477
      Location:296365
      SMAP; Small acidic protein family
    3. NM_001359861.1NP_001346790.1  arginine/serine-rich coiled-coil protein 2 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4), as well as variants 2 and 3, encodes isoform 2.
      Source sequence(s)
      AC129582
      Consensus CDS
      CCDS39272.1
      Related
      ENSMUSP00000050563.8, ENSMUST00000050827.14
      Conserved Domains (1) summary
      pfam15477
      Location:296365
      SMAP; Small acidic protein family
    4. NM_001359864.1NP_001346793.1  arginine/serine-rich coiled-coil protein 2 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC129582
      Conserved Domains (1) summary
      pfam15477
      Location:353422
      SMAP; Small acidic protein family
    5. NM_001359865.1NP_001346794.1  arginine/serine-rich coiled-coil protein 2 isoform 4

      Status: VALIDATED

      Description
      Transcript Variant: This variant (6), as well as variant 7, encodes isoform 4.
      Source sequence(s)
      AC129582
      Conserved Domains (1) summary
      pfam15477
      Location:295364
      SMAP; Small acidic protein family
    6. NM_001359866.1NP_001346795.1  arginine/serine-rich coiled-coil protein 2 isoform 4

      Status: VALIDATED

      Description
      Transcript Variant: This variant (7), as well as variant 6, encodes isoform 4.
      Source sequence(s)
      AC129582
      Conserved Domains (1) summary
      pfam15477
      Location:295364
      SMAP; Small acidic protein family
    7. NM_025438.2NP_079714.1  arginine/serine-rich coiled-coil protein 2 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR and 5' coding region and initiates translation at an alternate start codon, compared to variant 1. It encodes isoform 2, which has a shorter and distinct N-terminus, compared to isoform 1. Variants 2, 3, and 4 all encode the same isoform (2).
      Source sequence(s)
      AC129582, BP772863
      Consensus CDS
      CCDS39272.1
      UniProtKB/Swiss-Prot
      A2RTL5
      Related
      ENSMUSP00000049942.6, ENSMUST00000057795.12
      Conserved Domains (1) summary
      pfam15477
      Location:296365
      SMAP; Small acidic protein family

    RNA

    1. NR_153355.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC129582
    2. NR_153356.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC129582
    3. NR_153357.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC129582
    4. NR_153358.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC129582
    5. NR_153359.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC129582
    6. NR_153360.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC129582
    7. NR_153361.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC129582
    8. NR_153362.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC129582

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      123866489..123887522 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006530244.5XP_006530307.1  arginine/serine-rich coiled-coil protein 2 isoform X2

      Conserved Domains (1) summary
      pfam15477
      Location:306375
      SMAP; Small acidic protein family
    2. XM_006530241.5XP_006530304.1  arginine/serine-rich coiled-coil protein 2 isoform X1

      See identical proteins and their annotated locations for XP_006530304.1

      UniProtKB/TrEMBL
      S4R265
      Conserved Domains (1) summary
      pfam15477
      Location:307376
      SMAP; Small acidic protein family
    3. XM_011248190.4XP_011246492.1  arginine/serine-rich coiled-coil protein 2 isoform X3

      See identical proteins and their annotated locations for XP_011246492.1

      UniProtKB/TrEMBL
      B7ZNU2
      Conserved Domains (1) summary
      pfam15477
      Location:295364
      SMAP; Small acidic protein family
    4. XM_006530242.5XP_006530305.1  arginine/serine-rich coiled-coil protein 2 isoform X1

      See identical proteins and their annotated locations for XP_006530305.1

      UniProtKB/TrEMBL
      S4R265
      Related
      ENSMUSP00000138518.2, ENSMUST00000182489.8
      Conserved Domains (1) summary
      pfam15477
      Location:307376
      SMAP; Small acidic protein family
    5. XM_006530243.5XP_006530306.1  arginine/serine-rich coiled-coil protein 2 isoform X1

      See identical proteins and their annotated locations for XP_006530306.1

      UniProtKB/TrEMBL
      S4R265
      Conserved Domains (1) summary
      pfam15477
      Location:307376
      SMAP; Small acidic protein family

    RNA

    1. XR_004942474.1 RNA Sequence

    2. XR_001784647.3 RNA Sequence

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001005523.1: Suppressed sequence

      Description
      NM_001005523.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
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