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    Rsrc2 arginine/serine-rich coiled-coil 2 [ Mus musculus (house mouse) ]

    Gene ID: 208606, updated on 3-Feb-2018

    Summary

    Official Symbol
    Rsrc2provided by MGI
    Official Full Name
    arginine/serine-rich coiled-coil 2provided by MGI
    Primary source
    MGI:MGI:1913489
    See related
    Ensembl:ENSMUSG00000029422 Vega:OTTMUSG00000043608
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1500011J06Rik
    Expression
    Biased expression in CNS E11.5 (RPKM 41.6), CNS E14 (RPKM 26.5) and 14 other tissues See more
    Orthologs

    Genomic context

    See Rsrc2 in Genome Data Viewer
    Location:
    5; 5 F
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (123728426..123749417, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (124178439..124199421, complement)

    Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene zinc finger, CCHC domain containing 8 Neighboring gene polymerase (RNA) II (DNA directed) polypeptide K pseudogene Neighboring gene kinetochore associated 1 Neighboring gene hydroxycarboxylic acid receptor 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    • mRNA processing, organism-specific biosystem (from WikiPathways)
      mRNA processing, organism-specific biosystemAdapted from Reactome, see: [http://www.reactome.org/cgi-bin/eventbrowser_st_id?ST_ID=REACT_1675.1 REACT 1675.1] This process describes the conversion of precursor messenger RNA into mature messenge...

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    arginine/serine-rich coiled-coil protein 2

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001005525.2NP_001005525.1  arginine/serine-rich coiled-coil protein 2 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longest isoform (1).
      Source sequence(s)
      AC129582, AW557796, BC132550, BP772863
      Consensus CDS
      CCDS39271.1
      UniProtKB/Swiss-Prot
      A2RTL5
      UniProtKB/TrEMBL
      S4R2L4
      Related
      ENSMUSP00000138691.1, OTTMUSP00000063889, ENSMUST00000182309.7, OTTMUST00000114495
      Conserved Domains (1) summary
      pfam15477
      Location:354423
      SMAP; Small acidic protein family
    2. NM_001359860.1NP_001346789.1  arginine/serine-rich coiled-coil protein 2 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3), as well as variants 2 and 4, encodes isoform 2.
      Source sequence(s)
      AC129582
      Conserved Domains (1) summary
      pfam15477
      Location:296365
      SMAP; Small acidic protein family
    3. NM_001359861.1NP_001346790.1  arginine/serine-rich coiled-coil protein 2 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4), as well as variants 2 and 3, encodes isoform 2.
      Source sequence(s)
      AC129582
      Conserved Domains (1) summary
      pfam15477
      Location:296365
      SMAP; Small acidic protein family
    4. NM_001359864.1NP_001346793.1  arginine/serine-rich coiled-coil protein 2 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC129582
      Conserved Domains (1) summary
      pfam15477
      Location:353422
      SMAP; Small acidic protein family
    5. NM_001359865.1NP_001346794.1  arginine/serine-rich coiled-coil protein 2 isoform 4

      Status: VALIDATED

      Description
      Transcript Variant: This variant (6), as well as variant 7, encodes isoform 4.
      Source sequence(s)
      AC129582
      Conserved Domains (1) summary
      pfam15477
      Location:295364
      SMAP; Small acidic protein family
    6. NM_001359866.1NP_001346795.1  arginine/serine-rich coiled-coil protein 2 isoform 4

      Status: VALIDATED

      Description
      Transcript Variant: This variant (7), as well as variant 6, encodes isoform 4.
      Source sequence(s)
      AC129582
      Conserved Domains (1) summary
      pfam15477
      Location:295364
      SMAP; Small acidic protein family
    7. NM_025438.2NP_079714.1  arginine/serine-rich coiled-coil protein 2 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR and 5' coding region and initiates translation at an alternate start codon, compared to variant 1. It encodes isoform 2, which has a shorter and distinct N-terminus, compared to isoform 1. Variants 2, 3, and 4 all encode the same isoform (2).
      Source sequence(s)
      AC129582, BP772863
      Consensus CDS
      CCDS39272.1
      UniProtKB/Swiss-Prot
      A2RTL5
      Conserved Domains (1) summary
      pfam15477
      Location:296365
      SMAP; Small acidic protein family

    RNA

    1. NR_153355.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC129582
    2. NR_153356.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC129582
    3. NR_153357.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC129582
    4. NR_153358.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC129582
    5. NR_153359.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC129582
    6. NR_153360.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC129582
    7. NR_153361.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC129582
    8. NR_153362.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC129582

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

      Range
      123728426..123749417 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006530240.3XP_006530303.1  arginine/serine-rich coiled-coil protein 2 isoform X1

      Conserved Domains (1) summary
      pfam15477
      Location:353422
      SMAP; Small acidic protein family
    2. XM_006530244.3XP_006530307.1  arginine/serine-rich coiled-coil protein 2 isoform X3

      Conserved Domains (1) summary
      pfam15477
      Location:306375
      SMAP; Small acidic protein family
    3. XM_006530241.3XP_006530304.1  arginine/serine-rich coiled-coil protein 2 isoform X2

      See identical proteins and their annotated locations for XP_006530304.1

      UniProtKB/TrEMBL
      S4R265
      Conserved Domains (1) summary
      pfam15477
      Location:307376
      SMAP; Small acidic protein family
    4. XM_011248190.2XP_011246492.1  arginine/serine-rich coiled-coil protein 2 isoform X5

      See identical proteins and their annotated locations for XP_011246492.1

      UniProtKB/TrEMBL
      B7ZNU2
      Conserved Domains (1) summary
      pfam15477
      Location:295364
      SMAP; Small acidic protein family
    5. XM_006530245.3XP_006530308.1  arginine/serine-rich coiled-coil protein 2 isoform X4

      Related
      ENSMUSP00000049942.5, ENSMUST00000057795.11
      Conserved Domains (1) summary
      pfam15477
      Location:296365
      SMAP; Small acidic protein family
    6. XM_006530242.3XP_006530305.1  arginine/serine-rich coiled-coil protein 2 isoform X2

      See identical proteins and their annotated locations for XP_006530305.1

      UniProtKB/TrEMBL
      S4R265
      Related
      ENSMUSP00000138518.1, OTTMUSP00000063903, ENSMUST00000182489.7, OTTMUST00000114514
      Conserved Domains (1) summary
      pfam15477
      Location:307376
      SMAP; Small acidic protein family
    7. XM_017320778.1XP_017176267.1  arginine/serine-rich coiled-coil protein 2 isoform X5

      UniProtKB/TrEMBL
      B7ZNU2
      Conserved Domains (1) summary
      pfam15477
      Location:295364
      SMAP; Small acidic protein family
    8. XM_006530246.3XP_006530309.1  arginine/serine-rich coiled-coil protein 2 isoform X4

      UniProtKB/Swiss-Prot
      A2RTL5
      Related
      ENSMUSP00000050563.7, OTTMUSP00000063890, ENSMUST00000050827.13, OTTMUST00000114499
      Conserved Domains (1) summary
      pfam15477
      Location:296365
      SMAP; Small acidic protein family
    9. XM_006530243.3XP_006530306.1  arginine/serine-rich coiled-coil protein 2 isoform X2

      See identical proteins and their annotated locations for XP_006530306.1

      UniProtKB/TrEMBL
      S4R265
      Conserved Domains (1) summary
      pfam15477
      Location:307376
      SMAP; Small acidic protein family
    10. XM_017320779.1XP_017176268.1  arginine/serine-rich coiled-coil protein 2 isoform X5

      UniProtKB/TrEMBL
      B7ZNU2
      Conserved Domains (1) summary
      pfam15477
      Location:295364
      SMAP; Small acidic protein family
    11. XM_006530247.3XP_006530310.1  arginine/serine-rich coiled-coil protein 2 isoform X4

      UniProtKB/Swiss-Prot
      A2RTL5
      Conserved Domains (1) summary
      pfam15477
      Location:296365
      SMAP; Small acidic protein family

    RNA

    1. XR_001784647.1 RNA Sequence

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001005523.1: Suppressed sequence

      Description
      NM_001005523.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
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