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    Stag2 stromal antigen 2 [ Mus musculus (house mouse) ]

    Gene ID: 20843, updated on 10-Aug-2021

    Summary

    Official Symbol
    Stag2provided by MGI
    Official Full Name
    stromal antigen 2provided by MGI
    Primary source
    MGI:MGI:1098583
    See related
    Ensembl:ENSMUSG00000025862
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    S; SA; SA-2; SAP2; 9230105L23Rik; B230112I07Rik
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 11.4), liver E14 (RPKM 10.4) and 24 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Stag2 in Genome Data Viewer
    Location:
    X; X A4
    Exon count:
    39
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) X NC_000086.8 (41238172..41366063)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (42149297..42277186)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) X NC_000086.6 (39502589..39630352)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene X-linked inhibitor of apoptosis Neighboring gene zinc finger protein 7 pseudogene Neighboring gene RIKEN cDNA B230118I11 gene Neighboring gene predicted gene, 54068

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (3)  1 citation
    • Endonuclease-mediated (1) 

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables chromatin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables chromatin binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell cycle IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within cell division IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within chromosome segregation IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within meiotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in mitotic spindle assembly ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in sister chromatid cohesion IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in sister chromatid cohesion ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within stem cell population maintenance IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in chromatin IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in chromatin IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in chromatin ISO
    Inferred from Sequence Orthology
    more info
     
    located_in chromosome IEA
    Inferred from Electronic Annotation
    more info
     
    located_in chromosome, centromeric region IEA
    Inferred from Electronic Annotation
    more info
     
    part_of cohesin complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of cohesin complex ISO
    Inferred from Sequence Orthology
    more info
     
    located_in mitotic spindle pole ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nuclear matrix ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm TAS
    Traceable Author Statement
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    cohesin subunit SA-2
    Names
    SCC3 homolog 2
    nuclear protein SA2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001077712.2NP_001071180.1  cohesin subunit SA-2 isoform 1

      See identical proteins and their annotated locations for NP_001071180.1

      Status: VALIDATED

      Source sequence(s)
      AA461826, AK161072, AL672089, BC066041, CN669441, CO434048
      Consensus CDS
      CCDS40952.1
      UniProtKB/Swiss-Prot
      O35638
      Related
      ENSMUSP00000110724.2, ENSMUST00000115072.8
      Conserved Domains (1) summary
      pfam08514
      Location:157265
      STAG; STAG domain
    2. NM_001290713.2NP_001277642.1  cohesin subunit SA-2 isoform 2

      See identical proteins and their annotated locations for NP_001277642.1

      Status: VALIDATED

      Source sequence(s)
      AA461826, AK161072, AL672089, BC066041, CN708963, CO434048
      Consensus CDS
      CCDS72371.1
      UniProtKB/TrEMBL
      A2AFF6
      Conserved Domains (1) summary
      pfam08514
      Location:157265
      STAG; STAG domain
    3. NM_001358225.1NP_001345154.1  cohesin subunit SA-2 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AA461826, AL672089
      Consensus CDS
      CCDS40952.1
      Conserved Domains (1) summary
      pfam08514
      Location:157265
      STAG; STAG domain
    4. NM_021465.4NP_067440.3  cohesin subunit SA-2 isoform 1

      See identical proteins and their annotated locations for NP_067440.3

      Status: VALIDATED

      Source sequence(s)
      AA461826, AK146718, AK161072, BC066041, CO434048
      Consensus CDS
      CCDS40952.1
      UniProtKB/Swiss-Prot
      O35638
      UniProtKB/TrEMBL
      Q3TG33
      Related
      ENSMUSP00000063250.8, ENSMUST00000069619.14
      Conserved Domains (1) summary
      pfam08514
      Location:157265
      STAG; STAG domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      41238172..41366063
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030251277.2XP_030107137.1  cohesin subunit SA-2 isoform X1

      Conserved Domains (1) summary
      pfam08514
      Location:157265
      STAG; STAG domain
    2. XM_011250984.4XP_011249286.1  cohesin subunit SA-2 isoform X1

      See identical proteins and their annotated locations for XP_011249286.1

      UniProtKB/TrEMBL
      A2AFF6
      Related
      ENSMUSP00000110725.3, ENSMUST00000115073.9
      Conserved Domains (1) summary
      pfam08514
      Location:157265
      STAG; STAG domain
    3. XM_036161875.1XP_036017768.1  cohesin subunit SA-2 isoform X2

      Conserved Domains (1) summary
      pfam08514
      Location:157265
      STAG; STAG domain
    4. XM_011250987.2XP_011249289.1  cohesin subunit SA-2 isoform X1

      See identical proteins and their annotated locations for XP_011249289.1

      UniProtKB/TrEMBL
      A2AFF6
      Conserved Domains (1) summary
      pfam08514
      Location:157265
      STAG; STAG domain
    5. XM_036161873.1XP_036017766.1  cohesin subunit SA-2 isoform X2

      Conserved Domains (1) summary
      pfam08514
      Location:157265
      STAG; STAG domain
    6. XM_030251276.2XP_030107136.1  cohesin subunit SA-2 isoform X1

      Conserved Domains (1) summary
      pfam08514
      Location:157265
      STAG; STAG domain
    7. XM_036161872.1XP_036017765.1  cohesin subunit SA-2 isoform X1

      Conserved Domains (1) summary
      pfam08514
      Location:157265
      STAG; STAG domain
    8. XM_036161878.1XP_036017771.1  cohesin subunit SA-2 isoform X2

      Conserved Domains (1) summary
      pfam08514
      Location:157265
      STAG; STAG domain
    9. XM_011250989.4XP_011249291.1  cohesin subunit SA-2 isoform X2

      See identical proteins and their annotated locations for XP_011249291.1

      UniProtKB/Swiss-Prot
      O35638
      Conserved Domains (1) summary
      pfam08514
      Location:157265
      STAG; STAG domain
    10. XM_036161876.1XP_036017769.1  cohesin subunit SA-2 isoform X2

      Conserved Domains (1) summary
      pfam08514
      Location:157265
      STAG; STAG domain
    11. XM_011250985.4XP_011249287.1  cohesin subunit SA-2 isoform X1

      See identical proteins and their annotated locations for XP_011249287.1

      UniProtKB/TrEMBL
      A2AFF6
      Conserved Domains (1) summary
      pfam08514
      Location:157265
      STAG; STAG domain
    12. XM_036161874.1XP_036017767.1  cohesin subunit SA-2 isoform X2

      Conserved Domains (1) summary
      pfam08514
      Location:157265
      STAG; STAG domain
    13. XM_011250988.3XP_011249290.1  cohesin subunit SA-2 isoform X1

      See identical proteins and their annotated locations for XP_011249290.1

      UniProtKB/TrEMBL
      A2AFF6
      Conserved Domains (1) summary
      pfam08514
      Location:157265
      STAG; STAG domain
    14. XM_036161877.1XP_036017770.1  cohesin subunit SA-2 isoform X2

      Conserved Domains (1) summary
      pfam08514
      Location:157265
      STAG; STAG domain
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