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    Snu13 SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5) [ Mus musculus (house mouse) ]

    Gene ID: 20826, updated on 23-Jun-2021

    Summary

    Official Symbol
    Snu13provided by MGI
    Official Full Name
    SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5)provided by MGI
    Primary source
    MGI:MGI:893586
    See related
    Ensembl:ENSMUSG00000063480
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ss; FA-; Fta; Nhp; FA-1; Fta1; Ssfa1; Nhp2l1
    Expression
    Ubiquitous expression in liver E14.5 (RPKM 88.8), liver E14 (RPKM 82.9) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Snu13 in Genome Data Viewer
    Location:
    15 E1; 15 38.38 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (81925546..81931799, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (82041345..82047598, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (81871775..81878028, complement)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene NADH:ubiquinone oxidoreductase subunit B11B Neighboring gene X-ray repair complementing defective repair in Chinese hamster cells 6 Neighboring gene desumoylating isopeptidase 1 Neighboring gene RIKEN cDNA 4930407I10 gene Neighboring gene meiotic double-stranded break formation protein 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables ATPase binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables U3 snoRNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables U4 snRNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables U4atac snRNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables box C/D RNA binding IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    enables box C/D RNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    contributes_to snoRNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within RNA splicing IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in box C/D snoRNP assembly IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within mRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in mRNA splicing, via spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in mRNA splicing, via spliceosome ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in maturation of LSU-rRNA IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in maturation of SSU-rRNA IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within single fertilization IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    part_of U2-type precatalytic spliceosome ISO
    Inferred from Sequence Orthology
    more info
     
    part_of U4/U6 x U5 tri-snRNP complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of U4/U6 x U5 tri-snRNP complex ISO
    Inferred from Sequence Orthology
    more info
     
    part_of U4atac snRNP ISO
    Inferred from Sequence Orthology
    more info
     
    part_of box C/D RNP complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of box C/D RNP complex IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    part_of box C/D RNP complex ISO
    Inferred from Sequence Orthology
    more info
     
    located_in dense fibrillar component ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in plasma membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    part_of precatalytic spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of protein-containing complex ISO
    Inferred from Sequence Orthology
    more info
     
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
     
    part_of small-subunit processome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    NHP2-like protein 1
    Names
    NHP2 non-histone chromosome protein 2-like 1
    U4/U6.U5 small nuclear ribonucleoprotein SNU13
    U4/U6.U5 tri-snRNP 15.5 kDa protein
    fertilization antigen-1
    high mobility group-like nuclear protein 2 homolog 1
    sperm specific antigen 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_011482.4NP_035612.2  NHP2-like protein 1

      See identical proteins and their annotated locations for NP_035612.2

      Status: PROVISIONAL

      Source sequence(s)
      AK145391
      Consensus CDS
      CCDS37154.1
      UniProtKB/Swiss-Prot
      Q9D0T1
      Related
      ENSMUSP00000091840.6, ENSMUST00000080622.9
      Conserved Domains (1) summary
      cd21104
      Location:7128
      SNU13; U4/U6.U5 small nuclear ribonucleoprotein SNU13

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      81925546..81931799 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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