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    Smagp small cell adhesion glycoprotein [ Mus musculus (house mouse) ]

    Gene ID: 207818, updated on 28-Aug-2018

    Summary

    Official Symbol
    Smagpprovided by MGI
    Official Full Name
    small cell adhesion glycoproteinprovided by MGI
    Primary source
    MGI:MGI:2448476
    See related
    Ensembl:ENSMUSG00000053559
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Biased expression in colon adult (RPKM 168.3), duodenum adult (RPKM 139.4) and 14 other tissues See more
    Orthologs

    Genomic context

    See Smagp in Genome Data Viewer
    Location:
    15; 15 F1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 15 NC_000081.6 (100621339..100636940, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (100451770..100467296, complement)

    Chromosome 15 - NC_000081.6Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA C330013E15 gene Neighboring gene DAZ associated protein 2 Neighboring gene bridging integrator 2 Neighboring gene microRNA 6961 Neighboring gene chymotrypsin-like elastase family, member 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    General gene information

    Markers

    Homology

    Clone Names

    • MGC7903

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    cell junction ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasmic vesicle IEA
    Inferred from Electronic Annotation
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    small cell adhesion glycoprotein
    Names
    small cell transmembrane and glycosylated protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033872.2NP_001029044.1  small cell adhesion glycoprotein isoform 1

      See identical proteins and their annotated locations for NP_001029044.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Both variants 1 and 2 encode the same isoform (1).
      Source sequence(s)
      BG067486, BX635258, CJ042753, CJ053067
      Consensus CDS
      CCDS27842.1
      UniProtKB/Swiss-Prot
      Q99KC7
      Related
      ENSMUSP00000126870.1, ENSMUST00000172334.8
    2. NM_001285413.1NP_001272342.1  small cell adhesion glycoprotein isoform 2

      See identical proteins and their annotated locations for NP_001272342.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in its 5' UTR, and initiates translation at a downstream start codon, compared to variant 1. The encoded isoform (2) has a shorter N-terminus, compared to isoform 1. Both variants 3 and 4 encode the same isoform.
      Source sequence(s)
      BG067486, BX635258, CJ052873
      Related
      ENSMUSP00000155534.1, ENSMUST00000230517.1
    3. NM_001285414.1NP_001272343.1  small cell adhesion glycoprotein isoform 2

      See identical proteins and their annotated locations for NP_001272343.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) differs in its 5' UTR, and initiates translation at a downstream start codon, compared to variant 1. The encoded isoform (2) has a shorter N-terminus, compared to isoform 1. Both variants 3 and 4 encode the same isoform.
      Source sequence(s)
      BG067486, BX635258, CJ052870, CJ052873
      Related
      ENSMUSP00000155782.1, ENSMUST00000229307.1
    4. NM_174992.4NP_778157.2  small cell adhesion glycoprotein isoform 1

      See identical proteins and their annotated locations for NP_778157.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (1). Both variants 1 and 2 encode the same isoform.
      Source sequence(s)
      AC123724, BG067486, BX635258, CJ042753, CJ053067, CJ065989
      Consensus CDS
      CCDS27842.1
      UniProtKB/Swiss-Prot
      Q99KC7
      Related
      ENSMUSP00000066137.5, ENSMUST00000066068.6

    RNA

    1. NR_104337.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (5) uses alternate splice sites in the 5' and 3'-terminal exons, compared to variant 1. This variant is represented as non-coding because the predicted protein does not meet RefSeq quality criteria.
      Source sequence(s)
      BE132795, BG067486, BX635258, CJ053067
    2. NR_104338.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (6) uses an alternate splice site in the 3'-terminal exon, compared to variant 1. This variant is represented as non-coding because the predicted protein does not meet RefSeq quality criteria.
      Source sequence(s)
      AC123724, BE132795, BG067486, BX635258, CJ042753, CJ053067, CJ065989

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000081.6 Reference GRCm38.p4 C57BL/6J

      Range
      100621339..100636940 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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