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    Sec23ip Sec23 interacting protein [ Mus musculus (house mouse) ]

    Gene ID: 207352, updated on 23-Jun-2021

    Summary

    Official Symbol
    Sec23ipprovided by MGI
    Official Full Name
    Sec23 interacting proteinprovided by MGI
    Primary source
    MGI:MGI:2450915
    See related
    Ensembl:ENSMUSG00000055319
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    p12; p125; D7Ertd373; D7Ertd373e
    Expression
    Ubiquitous expression in testis adult (RPKM 24.2), thymus adult (RPKM 11.5) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Sec23ip in Genome Data Viewer
    Location:
    7 F3; 7 70.51 cM
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (128346586..128386560)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (128744862..128784836)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (135888384..135928350)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene inositol polyphosphate-5-phosphatase F Neighboring gene pentatricopeptide repeat domain 3 pseudogene Neighboring gene minichromosome maintenance complex binding protein Neighboring gene predicted gene, 39093 Neighboring gene predicted gene, 32884

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables phospholipase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within acrosome assembly IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within single fertilization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within spermatid development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in COPII-coated ER to Golgi transport vesicle IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cis-Golgi network IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in cytoplasmic vesicle IEA
    Inferred from Electronic Annotation
    more info
     
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
     
    located_in endoplasmic reticulum exit site IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in intracellular membrane-bounded organelle ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in perinuclear endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in perinuclear region of cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001029982.2NP_001025153.2  SEC23-interacting protein

      See identical proteins and their annotated locations for NP_001025153.2

      Status: VALIDATED

      Source sequence(s)
      AC136741, AK048053, BC116304, BY726433
      Consensus CDS
      CCDS21900.1
      UniProtKB/TrEMBL
      A0AUN0, G3X928
      Related
      ENSMUSP00000035610.9, ENSMUST00000042942.10
      Conserved Domains (3) summary
      smart00454
      Location:649700
      SAM; Sterile alpha motif
      pfam02862
      Location:780986
      DDHD; DDHD domain
      cl15755
      Location:634702
      SAM_superfamily; SAM (Sterile alpha motif )

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      128346586..128386560
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006507519.4XP_006507582.1  SEC23-interacting protein isoform X1

      See identical proteins and their annotated locations for XP_006507582.1

      Conserved Domains (3) summary
      pfam05109
      Location:37195
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      pfam02862
      Location:780985
      DDHD; DDHD domain
      cl15755
      Location:634702
      SAM_superfamily; SAM (Sterile alpha motif )
    2. XM_006507521.2XP_006507584.1  SEC23-interacting protein isoform X2

      Conserved Domains (2) summary
      pfam02862
      Location:548754
      DDHD; DDHD domain
      cl15755
      Location:402470
      SAM_superfamily; SAM (Sterile alpha motif )
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