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    Snrpe small nuclear ribonucleoprotein E [ Mus musculus (house mouse) ]

    Gene ID: 20643, updated on 5-Aug-2018

    Summary

    Official Symbol
    Snrpeprovided by MGI
    Official Full Name
    small nuclear ribonucleoprotein Eprovided by MGI
    Primary source
    MGI:MGI:98346
    See related
    Ensembl:ENSMUSG00000090553 Vega:OTTMUSG00000035312
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    SME; C76690; AL022645
    Expression
    Broad expression in CNS E11.5 (RPKM 136.5), liver E14 (RPKM 135.9) and 19 other tissues See more
    Orthologs

    Genomic context

    See Snrpe in Genome Data Viewer
    Location:
    1; 1 E4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 1 NC_000067.6 (133603871..133610280, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (135500448..135506857, complement)

    Chromosome 1 - NC_000067.6Genomic Context describing neighboring genes Neighboring gene SRY (sex determining region Y)-box 13 Neighboring gene ribosomal protein L7A pseudogene Neighboring gene zinc finger CCCH type containing 11A Neighboring gene zinc finger, BED type containing 6 Neighboring gene lymphocyte transmembrane adaptor 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    U1 snRNP binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    RNA splicing IEA
    Inferred from Electronic Annotation
    more info
     
    mRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
     
    spliceosomal snRNP assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    U1 snRNP IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    U1 snRNP ISO
    Inferred from Sequence Orthology
    more info
     
    U2 snRNP IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    U4 snRNP IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    U4/U6 x U5 tri-snRNP complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    U5 snRNP IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    small nuclear ribonucleoprotein E
    Names
    sm protein E
    sm-E
    snRNP-E

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_009227.3NP_033253.1  small nuclear ribonucleoprotein E

      See identical proteins and their annotated locations for NP_033253.1

      Status: VALIDATED

      Source sequence(s)
      AW492281, BY168551
      Consensus CDS
      CCDS48364.1
      UniProtKB/Swiss-Prot
      P62305
      Related
      ENSMUSP00000128400.1, OTTMUSP00000049358, ENSMUST00000166915.7, OTTMUST00000090098
      Conserved Domains (1) summary
      cd01718
      Location:1189
      Sm_E; Sm protein E

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000067.6 Reference GRCm38.p4 C57BL/6J

      Range
      133603871..133610280 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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