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    Rps29 ribosomal protein S29 [ Mus musculus (house mouse) ]

    Gene ID: 20090, updated on 5-Aug-2018

    Summary

    Official Symbol
    Rps29provided by MGI
    Official Full Name
    ribosomal protein S29provided by MGI
    Primary source
    MGI:MGI:107681
    See related
    Ensembl:ENSMUSG00000034892 Vega:OTTMUSG00000023728
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Ubiquitous expression in bladder adult (RPKM 482.4), liver E14 (RPKM 474.6) and 28 other tissues See more
    Orthologs

    Genomic context

    See Rps29 in Genome Data Viewer
    Location:
    12; 12 C2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 12 NC_000078.6 (69157722..69159186, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (70258709..70260173, complement)

    Chromosome 12 - NC_000078.6Genomic Context describing neighboring genes Neighboring gene thioredoxin domain containing 9 pseudogene Neighboring gene predicted gene, 31447 Neighboring gene ribosomal protein S8 pseudogene Neighboring gene 7S RNA 1 Neighboring gene leucine rich repeat protein 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    structural constituent of ribosome ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    zinc ion binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    zinc ion binding ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    Process Evidence Code Pubs
    cytoplasmic translation ISO
    Inferred from Sequence Orthology
    more info
     
    positive regulation of apoptotic process ISO
    Inferred from Sequence Orthology
    more info
     
    translation ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytosolic small ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytosolic small ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
     
    intracellular IEA
    Inferred from Electronic Annotation
    more info
     
    polysomal ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    ribosome IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    40S ribosomal protein S29
    Names
    S29 ribosomal protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_009093.2NP_033119.1  40S ribosomal protein S29

      See identical proteins and their annotated locations for NP_033119.1

      Status: VALIDATED

      Source sequence(s)
      AA217935, AC099934, BC051203
      Consensus CDS
      CCDS36461.1
      UniProtKB/Swiss-Prot
      P62274
      Related
      ENSMUSP00000038352.8, OTTMUSP00000028023, ENSMUST00000037023.8, OTTMUST00000057950
      Conserved Domains (1) summary
      PTZ00218
      Location:156
      PTZ00218; 40S ribosomal protein S29; Provisional

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000078.6 Reference GRCm38.p4 C57BL/6J

      Range
      69157722..69159186 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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