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    Rps24 ribosomal protein S24 [ Mus musculus (house mouse) ]

    Gene ID: 20088, updated on 5-Aug-2018

    Summary

    Official Symbol
    Rps24provided by MGI
    Official Full Name
    ribosomal protein S24provided by MGI
    Primary source
    MGI:MGI:98147
    See related
    Ensembl:ENSMUSG00000025290
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 223.6), bladder adult (RPKM 143.0) and 24 other tissues See more
    Orthologs

    Genomic context

    See Rps24 in Genome Data Viewer
    Location:
    14; 14 A3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 14 NC_000080.6 (24490633..24496146)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 14 NC_000080.5 (25309903..25315368)

    Chromosome 14 - NC_000080.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 41109 Neighboring gene polymerase (RNA) III (DNA directed) polypeptide A Neighboring gene predicted gene, 31720 Neighboring gene RIKEN cDNA 4931403M11 gene Neighboring gene RIKEN cDNA 4930428N03 gene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC107549

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    structural constituent of ribosome ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    translation initiation factor binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    erythrocyte homeostasis ISO
    Inferred from Sequence Orthology
    more info
     
    rRNA processing ISO
    Inferred from Sequence Orthology
    more info
     
    ribosomal small subunit biogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    translation ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    Component Evidence Code Pubs
    cytosolic small ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    intracellular IEA
    Inferred from Electronic Annotation
    more info
     
    ribosome IEA
    Inferred from Electronic Annotation
    more info
     
    small ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    40S ribosomal protein S24
    Names
    MRP S24

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001360584.1NP_001347513.1  40S ribosomal protein S24 isoform 4

      Status: VALIDATED

      Source sequence(s)
      AC154573, AK049387, AV005700, BY311117, BY705524, CJ221494
      Conserved Domains (1) summary
      PTZ00071
      Location:1130
      PTZ00071; 40S ribosomal protein S24; Provisional
    2. NM_001360585.1NP_001347514.1  40S ribosomal protein S24 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC154573, AK049387, BY311117, BY705524, CJ221494, CX734306
      Conserved Domains (1) summary
      PTZ00071
      Location:1130
      PTZ00071; 40S ribosomal protein S24; Provisional
    3. NM_001360586.1NP_001347515.1  40S ribosomal protein S24 isoform 6

      Status: VALIDATED

      Source sequence(s)
      AK049387, BB680942, BY139840, CJ221494, CX768480
      Conserved Domains (1) summary
      cl00878
      Location:1118
      Ribosomal_S24e; Ribosomal protein S24e
    4. NM_011297.3NP_035427.2  40S ribosomal protein S24 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) contains an alternate segment, which results in the use of an early stop codon, compared to variant 2. The resulting protein (isoform 1) has a shorter C-terminus when compared to isoform 2.
      Source sequence(s)
      AC154573, AK005358, AK049387, BY311117, CJ221494
      Consensus CDS
      CCDS36830.1
      UniProtKB/Swiss-Prot
      P62849
      Related
      ENSMUSP00000125977.2, ENSMUST00000169826.2
      Conserved Domains (1) summary
      PTZ00071
      Location:1130
      PTZ00071; 40S ribosomal protein S24; Provisional
    5. NM_207634.2NP_997517.1  40S ribosomal protein S24 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) is the shortest transcript yet it encodes the longest protein (isoform 2).
      Source sequence(s)
      AC154573, AK007776, AK049387, BY311117, CJ221494
      Consensus CDS
      CCDS36829.1
      UniProtKB/Swiss-Prot
      P62849
      UniProtKB/TrEMBL
      Q5M9M7
      Related
      ENSMUSP00000152944.1, ENSMUST00000225023.1
      Conserved Domains (1) summary
      PTZ00071
      Location:1130
      PTZ00071; 40S ribosomal protein S24; Provisional
    6. NM_207635.2NP_997518.1  40S ribosomal protein S24 isoform 3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) contains two adjacent segments in the coding region, which result in the use of an early stop codon, compared to variant 2. The resulting protein (isoform 3) is shorter when compared to isoform 2.
      Source sequence(s)
      AC154573, AK009048, AK049387, BY311117, CJ221494
      UniProtKB/Swiss-Prot
      P62849
      UniProtKB/TrEMBL
      Q9D7P1
      Related
      ENSMUSP00000153659.1, ENSMUST00000223999.1
      Conserved Domains (1) summary
      PTZ00071
      Location:1130
      PTZ00071; 40S ribosomal protein S24; Provisional

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000080.6 Reference GRCm38.p4 C57BL/6J

      Range
      24490633..24496146
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006518732.2XP_006518795.1  40S ribosomal protein S24 isoform X1

      Conserved Domains (1) summary
      PTZ00071
      Location:1130
      PTZ00071; 40S ribosomal protein S24; Provisional
    2. XM_006518733.1XP_006518796.1  40S ribosomal protein S24 isoform X2

      UniProtKB/TrEMBL
      Q9D7P1
      Conserved Domains (1) summary
      PTZ00071
      Location:1130
      PTZ00071; 40S ribosomal protein S24; Provisional
    3. XM_006518734.1XP_006518797.1  40S ribosomal protein S24 isoform X3

      UniProtKB/Swiss-Prot
      P62849
      Conserved Domains (1) summary
      PTZ00071
      Location:1130
      PTZ00071; 40S ribosomal protein S24; Provisional
    4. XM_006518735.1XP_006518798.1  40S ribosomal protein S24 isoform X4

      UniProtKB/TrEMBL
      A0A286YEB7
      Related
      ENSMUSP00000153637.1, ENSMUST00000224568.1
      Conserved Domains (1) summary
      cl00878
      Location:1118
      Ribosomal_S24e; Ribosomal protein S24e

    RNA

    1. XR_001781098.1 RNA Sequence

      Related
      ENSMUST00000223939.1
    2. XR_001781099.1 RNA Sequence

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