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    Rps24 ribosomal protein S24 [ Mus musculus (house mouse) ]

    Gene ID: 20088, updated on 23-Jun-2021

    Summary

    Official Symbol
    Rps24provided by MGI
    Official Full Name
    ribosomal protein S24provided by MGI
    Primary source
    MGI:MGI:98147
    See related
    Ensembl:ENSMUSG00000025290
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 223.6), bladder adult (RPKM 143.0) and 24 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Rps24 in Genome Data Viewer
    Location:
    14; 14 A3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (24540746..24547028)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (24490678..24496960)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 14 NC_000080.5 (25309903..25315368)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 47814 Neighboring gene polymerase (RNA) III (DNA directed) polypeptide A Neighboring gene predicted gene, 31720 Neighboring gene predicted gene, 31775 Neighboring gene predicted gene, 31951

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC107549

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables structural constituent of ribosome ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    enables translation initiation factor binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in erythrocyte homeostasis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in rRNA processing ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in ribosomal small subunit biogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within translation ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytosol TAS
    Traceable Author Statement
    more info
     
    located_in cytosolic ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    part_of cytosolic small ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    located_in endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
     
    part_of small ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    40S ribosomal protein S24
    Names
    MRP S24

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001360584.1NP_001347513.1  40S ribosomal protein S24 isoform 4

      Status: VALIDATED

      Source sequence(s)
      AC154573, AK049387, AV005700, BY311117, BY705524, CJ221494
      Conserved Domains (1) summary
      PTZ00071
      Location:1130
      PTZ00071; 40S ribosomal protein S24; Provisional
    2. NM_001360585.1NP_001347514.1  40S ribosomal protein S24 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC154573, AK049387, BY311117, BY705524, CJ221494, CX734306
      Conserved Domains (1) summary
      PTZ00071
      Location:1130
      PTZ00071; 40S ribosomal protein S24; Provisional
    3. NM_001360586.1NP_001347515.1  40S ribosomal protein S24 isoform 6

      Status: VALIDATED

      Source sequence(s)
      AK049387, BB680942, BY139840, CJ221494, CX768480
      Consensus CDS
      CCDS88598.1
      Related
      ENSMUSP00000153637.2, ENSMUST00000224568.2
      Conserved Domains (1) summary
      cl00878
      Location:1118
      Ribosomal_S24e; Ribosomal protein S24e
    4. NM_011297.3NP_035427.2  40S ribosomal protein S24 isoform 1

      See identical proteins and their annotated locations for NP_035427.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) contains an alternate segment, which results in the use of an early stop codon, compared to variant 2. The resulting protein (isoform 1) has a shorter C-terminus when compared to isoform 2.
      Source sequence(s)
      AC154573, AK005358, AK049387, BY311117, CJ221494
      Consensus CDS
      CCDS36830.1
      UniProtKB/Swiss-Prot
      P62849
      Related
      ENSMUSP00000125977.3, ENSMUST00000169826.3
      Conserved Domains (1) summary
      PTZ00071
      Location:1130
      PTZ00071; 40S ribosomal protein S24; Provisional
    5. NM_207634.2NP_997517.1  40S ribosomal protein S24 isoform 2

      See identical proteins and their annotated locations for NP_997517.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) is the shortest transcript yet it encodes the longest protein (isoform 2).
      Source sequence(s)
      AC154573, AK007776, AK049387, BY311117, CJ221494
      Consensus CDS
      CCDS36829.1
      UniProtKB/Swiss-Prot
      P62849
      UniProtKB/TrEMBL
      Q5M9M7
      Related
      ENSMUSP00000152944.2, ENSMUST00000225023.2
      Conserved Domains (1) summary
      PTZ00071
      Location:1130
      PTZ00071; 40S ribosomal protein S24; Provisional
    6. NM_207635.2NP_997518.1  40S ribosomal protein S24 isoform 3

      See identical proteins and their annotated locations for NP_997518.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) contains two adjacent segments in the coding region, which result in the use of an early stop codon, compared to variant 2. The resulting protein (isoform 3) is shorter when compared to isoform 2.
      Source sequence(s)
      AC154573, AK009048, AK049387, BY311117, CJ221494
      Consensus CDS
      CCDS88597.1
      UniProtKB/Swiss-Prot
      P62849
      UniProtKB/TrEMBL
      Q9D7P1
      Related
      ENSMUSP00000153659.2, ENSMUST00000223999.2
      Conserved Domains (1) summary
      PTZ00071
      Location:1130
      PTZ00071; 40S ribosomal protein S24; Provisional

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      24540746..24547028
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030247696.1XP_030103556.1  40S ribosomal protein S24 isoform X1

      Conserved Domains (1) summary
      cl00878
      Location:1118
      Ribosomal_S24e; Ribosomal protein S24e
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