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    Rps12 ribosomal protein S12 [ Mus musculus (house mouse) ]

    Gene ID: 20042, updated on 5-Aug-2018

    Summary

    Official Symbol
    Rps12provided by MGI
    Official Full Name
    ribosomal protein S12provided by MGI
    Primary source
    MGI:MGI:98105
    See related
    Ensembl:ENSMUSG00000061983
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Ubiquitous expression in liver E14 (RPKM 1796.8), liver E14.5 (RPKM 1660.8) and 28 other tissues See more
    Orthologs

    Genomic context

    See Rps12 in Genome Data Viewer
    Location:
    10; 10 A4
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 10 NC_000076.6 (23785183..23787209, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (23504989..23507015, complement)

    Chromosome 10 - NC_000076.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 35291 Neighboring gene nuclear encoded tRNA trytophan 1 (anticodon CCA) Neighboring gene small nucleolar RNA, C/D box 100 Neighboring gene small nucleolar RNA, H/ACA box 33 Neighboring gene solute carrier family 18, subfamily B, member 1 Neighboring gene vanin 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC102111, MGC102112, MGC102499, MGC117504

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    cytosolic large ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
     
    cytosolic small ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytosolic small ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
     
    intracellular membrane-bounded organelle ISO
    Inferred from Sequence Orthology
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_011295.6NP_035425.2  40S ribosomal protein S12

      See identical proteins and their annotated locations for NP_035425.2

      Status: VALIDATED

      Source sequence(s)
      AK166992, BY128264, CJ207519
      Consensus CDS
      CCDS23733.1
      UniProtKB/TrEMBL
      Q6ZWZ6
      Related
      ENSMUSP00000151305.1, ENSMUST00000218107.1
      Conserved Domains (1) summary
      pfam01248
      Location:16111
      Ribosomal_L7Ae; Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000076.6 Reference GRCm38.p4 C57BL/6J

      Range
      23785183..23787209 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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