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    Rpl30 ribosomal protein L30 [ Mus musculus (house mouse) ]

    Gene ID: 19946, updated on 1-Nov-2018

    Summary

    Official Symbol
    Rpl30provided by MGI
    Official Full Name
    ribosomal protein L30provided by MGI
    Primary source
    MGI:MGI:98037
    See related
    Ensembl:ENSMUSG00000058600 Vega:OTTMUSG00000023325
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Broad expression in bladder adult (RPKM 355.7), liver E14 (RPKM 337.8) and 24 other tissues See more
    Orthologs

    Genomic context

    See Rpl30 in Genome Data Viewer
    Location:
    15 B3.1; 15 14.33 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 15 NC_000081.6 (34440505..34443276, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (34370260..34373031, complement)

    Chromosome 15 - NC_000081.6Genomic Context describing neighboring genes Neighboring gene lysosomal-associated protein transmembrane 4B Neighboring gene eukaryotic translation initiation factor 4A2 pseudogene Neighboring gene matrilin 2 Neighboring gene RIKEN cDNA 9430069I07 gene Neighboring gene glutamate rich 5 Neighboring gene reactive intermediate imine deaminase A homolog

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC106425, MGC107559

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    selenocysteine insertion sequence binding ISO
    Inferred from Sequence Orthology
    more info
     
    structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    antimicrobial humoral immune response mediated by antimicrobial peptide ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasmic translation ISO
    Inferred from Sequence Orthology
    more info
     
    defense response to Gram-negative bacterium ISO
    Inferred from Sequence Orthology
    more info
     
    killing of cells of other organism ISO
    Inferred from Sequence Orthology
    more info
     
    translation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytosolic large ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytosolic large ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
     
    intracellular IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    polysomal ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    postsynaptic density EXP
    Inferred from Experiment
    more info
    PubMed 
    postsynaptic density IDA
    Inferred from Direct Assay
    more info
    PubMed 
    postsynaptic density ISO
    Inferred from Sequence Orthology
    more info
     
    ribosome ISO
    Inferred from Sequence Orthology
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001163485.1NP_001156957.1  60S ribosomal protein L30

      See identical proteins and their annotated locations for NP_001156957.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks sequence in the 5' UTR, compared to variant 1. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      BC086891, BC100608, BG370645
      Consensus CDS
      CCDS37057.1
      UniProtKB/Swiss-Prot
      P62889
      UniProtKB/TrEMBL
      Q497D7, Q58DZ3, Q5PR15
      Related
      ENSMUSP00000106014.1, OTTMUSP00000027166, ENSMUST00000079735.11, OTTMUST00000056505
      Conserved Domains (1) summary
      PTZ00106
      Location:2107
      PTZ00106; 60S ribosomal protein L30; Provisional
    2. NM_009083.4NP_033109.1  60S ribosomal protein L30

      See identical proteins and their annotated locations for NP_033109.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      AK002988, CJ048578, CO806526
      Consensus CDS
      CCDS37057.1
      UniProtKB/Swiss-Prot
      P62889
      UniProtKB/TrEMBL
      Q58DZ3
      Related
      ENSMUSP00000009039.5, OTTMUSP00000027167, ENSMUST00000009039.5, OTTMUST00000056506
      Conserved Domains (1) summary
      PTZ00106
      Location:2107
      PTZ00106; 60S ribosomal protein L30; Provisional

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000081.6 Reference GRCm38.p4 C57BL/6J

      Range
      34440505..34443276 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_001450.1: Suppressed sequence

      Description
      NG_001450.1: This RefSeq was permanently suppressed because it is now thought that this gene does encode a protein.
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