Format

Send to:

Choose Destination
    • Showing Current items.

    Rpl29 ribosomal protein L29 [ Mus musculus (house mouse) ]

    Gene ID: 19944, updated on 8-Jul-2021

    Summary

    Official Symbol
    Rpl29provided by MGI
    Official Full Name
    ribosomal protein L29provided by MGI
    Primary source
    MGI:MGI:99687
    See related
    Ensembl:ENSMUSG00000048758
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Rp; Rpl43
    Expression
    Ubiquitous expression in liver E14 (RPKM 84.5), liver E14.5 (RPKM 83.8) and 28 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Rpl29 in Genome Data Viewer
    Location:
    9; 9 F1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (106306610..106308767)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (106428889..106431568)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (106331870..106333898)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene dual specificity phosphatase 7 Neighboring gene predicted gene, 33616 Neighboring gene predicted gene, 46131 Neighboring gene aminoacylase 1 Neighboring gene abhydrolase domain containing 14A Neighboring gene abhydrolase domain containing 14b

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC107574, MGC107575, MGC107576

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables heparin binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables structural constituent of ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in cytosol TAS
    Traceable Author Statement
    more info
     
    part_of cytosolic large ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in cytosolic ribosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytosolic ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    located_in extrinsic component of membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in polysomal ribosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
     
    located_in synapse EXP
    Inferred from Experiment
    more info
    PubMed 
    is_active_in synapse IDA
    Inferred from Direct Assay
    more info
    PubMed 

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001324533.1NP_001311462.1  60S ribosomal protein L29

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the predominate transcript. Variants 1-3 encode the same protein.
      Source sequence(s)
      AK141477, BC081467, BY002054
      Consensus CDS
      CCDS23476.1
      UniProtKB/Swiss-Prot
      P47915
      UniProtKB/TrEMBL
      Q5M8M8
      Related
      ENSMUSP00000117834.2, ENSMUST00000150576.8
      Conserved Domains (1) summary
      pfam01779
      Location:442
      Ribosomal_L29e; Ribosomal L29e protein family
    2. NM_001324534.1NP_001311463.1  60S ribosomal protein L29

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) contains an alternate segment in the 5' UTR, compared to variant 1. Variants 1-3 encode the same protein.
      Source sequence(s)
      AC151729, BC081467
      Consensus CDS
      CCDS23476.1
      UniProtKB/Swiss-Prot
      P47915
      UniProtKB/TrEMBL
      Q5M8M8
      Related
      ENSMUSP00000149722.2, ENSMUST00000213448.2
      Conserved Domains (1) summary
      pfam01779
      Location:442
      Ribosomal_L29e; Ribosomal L29e protein family
    3. NM_009082.3NP_033108.1  60S ribosomal protein L29

      See identical proteins and their annotated locations for NP_033108.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) contains an alternate segment in the 5' UTR, compared to variant 1. Variants 1-3 encode the same protein.
      Source sequence(s)
      AK013307, AK141477, BC081467, BY002054
      Consensus CDS
      CCDS23476.1
      UniProtKB/Swiss-Prot
      P47915
      UniProtKB/TrEMBL
      Q5M8M8
      Related
      ENSMUSP00000080203.6, ENSMUST00000059802.7
      Conserved Domains (1) summary
      pfam01779
      Location:442
      Ribosomal_L29e; Ribosomal L29e protein family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      106306610..106308767
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006511660.5XP_006511723.1  60S ribosomal protein L29 isoform X1

      See identical proteins and their annotated locations for XP_006511723.1

      UniProtKB/Swiss-Prot
      P47915
      UniProtKB/TrEMBL
      Q5M8M8
      Conserved Domains (1) summary
      pfam01779
      Location:442
      Ribosomal_L29e; Ribosomal L29e protein family
    Support Center