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    Rpl27 ribosomal protein L27 [ Mus musculus (house mouse) ]

    Gene ID: 19942, updated on 26-Sep-2022

    Summary

    Official Symbol
    Rpl27provided by MGI
    Official Full Name
    ribosomal protein L27provided by MGI
    Primary source
    MGI:MGI:98036
    See related
    Ensembl:ENSMUSG00000063316 AllianceGenome:MGI:98036
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to be a structural constituent of ribosome. Predicted to be involved in rRNA processing. Predicted to be located in cytosolic ribosome; nucleolus; and nucleoplasm. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in lower jaw molar; lower jaw tooth; tooth; and upper jaw incisor. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 16. Orthologous to human RPL27 (ribosomal protein L27). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in liver E14 (RPKM 264.7), liver E14.5 (RPKM 220.0) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Rpl27 in Genome Data Viewer
    Location:
    11; 11 D
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (101333071..101336422)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (101442245..101445596)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene prostaglandin E synthase 3 like Neighboring gene microRNA 6929 Neighboring gene RUN domain containing 1 Neighboring gene interferon-induced protein 35 Neighboring gene vesicle amine transport 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC103134

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables structural constituent of ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in cytoplasmic translation IC
    Inferred by Curator
    more info
    PubMed 
    involved_in rRNA processing ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in translation at postsynapse NAS
    Non-traceable Author Statement
    more info
    PubMed 
    involved_in translation at presynapse NAS
    Non-traceable Author Statement
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IC
    Inferred by Curator
    more info
    PubMed 
    located_in cytosol TAS
    Traceable Author Statement
    more info
     
    part_of cytosolic large ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of cytosolic large ribosomal subunit IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    part_of cytosolic large ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytosolic ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in postsynapse NAS
    Non-traceable Author Statement
    more info
    PubMed 
    is_active_in presynapse NAS
    Non-traceable Author Statement
    more info
    PubMed 
    part_of ribonucleoprotein complex ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    located_in ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in ribosome NAS
    Non-traceable Author Statement
    more info
    PubMed 
    is_active_in synapse EXP
    Inferred from Experiment
    more info
    PubMed 
    is_active_in synapse IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in synapse NAS
    Non-traceable Author Statement
    more info
    PubMed 

    General protein information

    Preferred Names
    60S ribosomal protein L27
    NP_035419.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_011289.3NP_035419.1  60S ribosomal protein L27

      See identical proteins and their annotated locations for NP_035419.1

      Status: VALIDATED

      Source sequence(s)
      AK132027, BQ748836, CN831363
      Consensus CDS
      CCDS25470.1
      UniProtKB/Swiss-Prot
      P61358
      UniProtKB/TrEMBL
      A0A6P5PZT0, A0A8C6I557, Q5BLJ9
      Related
      ENSMUSP00000090305.6, ENSMUST00000077856.13
      Conserved Domains (1) summary
      cl00354
      Location:1136
      KOW; an acronym for the authors' surnames (Kyrpides, Ouzounis and Woese)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      101333071..101336422
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)