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    Rpl27 ribosomal protein L27 [ Mus musculus (house mouse) ]

    Gene ID: 19942, updated on 5-Aug-2018

    Summary

    Official Symbol
    Rpl27provided by MGI
    Official Full Name
    ribosomal protein L27provided by MGI
    Primary source
    MGI:MGI:98036
    See related
    Ensembl:ENSMUSG00000063316 Vega:OTTMUSG00000002868
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Ubiquitous expression in liver E14 (RPKM 264.7), liver E14.5 (RPKM 220.0) and 28 other tissues See more
    Orthologs

    Genomic context

    See Rpl27 in Genome Data Viewer
    Location:
    11; 11 D
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 11 NC_000077.6 (101442245..101445596)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (101303559..101306910)

    Chromosome 11 - NC_000077.6Genomic Context describing neighboring genes Neighboring gene prostaglandin E synthase 3 like Neighboring gene microRNA 6929 Neighboring gene RUN domain containing 1 Neighboring gene interferon-induced protein 35 Neighboring gene vesicle amine transport 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC103134

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    rRNA processing ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    cytosolic large ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytosolic large ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
     
    ribonucleoprotein complex ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    ribosome ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    60S ribosomal protein L27
    NP_035419.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_011289.3NP_035419.1  60S ribosomal protein L27

      See identical proteins and their annotated locations for NP_035419.1

      Status: VALIDATED

      Source sequence(s)
      AK132027, BQ748836, CN831363
      Consensus CDS
      CCDS25470.1
      UniProtKB/Swiss-Prot
      P61358
      UniProtKB/TrEMBL
      Q5BLJ9
      Related
      ENSMUSP00000090305.5, OTTMUSP00000002769, ENSMUST00000077856.12, OTTMUST00000005860
      Conserved Domains (1) summary
      cl00354
      Location:1136
      KOW; KOW: an acronym for the authors' surnames (Kyrpides, Ouzounis and Woese)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000077.6 Reference GRCm38.p4 C57BL/6J

      Range
      101442245..101445596
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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